Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0483 ATGATGCCCCCTGACCAAGAAACCAGCACTGTTGTTACTACCACGGTGGTAACAAACATTCCGGCCATCACGAACCGGTCGGAGAAAAGCTCGGTCCACGCCGAACTGGATGGTTCGAGTTCAACCCAGCTTACTGACAGAAAACCCAGTTTGGATTCTGGCATTCCCGTCCATGACCAGCCAACAATAGTCAGATTTTCAAATATTCTTCATCAATCATTGCGTCCTGTTACCCTCAAATTTGAGGATTTCTCTTACAGTGTAACTTTTCCAACCAAAAATAATGGTTGTTGTGTTTCTTCAAAAGAGCCAAAACTGACCCGGACAATACTTAACGGCGTGACCGGGATTGTCCGGCCCGGCGAGTTTATGGCAATGCTGGGTCCTTCCGGTAGTGGCAAGACCACGCTGCTCACCGCCCTCGCTGGCCGGCTCAACGGGAAAGTCTCGGGTTCTATAACATACAATGGCCATCGCTTCTCTAGCTCCATGAAGCGCAAGACTGGGTTTGTCTCACAAGATGATGTGCTTTACCCTCATCTCACCGTGCTCGAAACACTTACTTACGCAGCTTTGTTAAGACTACCCAAAACTCTCAGTAAAGAAGAGAAAGTGGAGCAAGCCGAGACGGTCATGGCGGAGCTCGGGTTAACGAGGTGCCGGAACAGCCCAGTCGGAGGCGGCACAAGCATGTTTCGGGGCATTTCCGGCGGTGAGAAAAAACGGGTCAGTATCGGGCAGGAGATGTTAGTGAACCCGAGTTTGTTATTGCTGGATGAACCAACATCTGGGTTGGACTCCACCACGGCGCAACGCATCGTGGCCATGCTTAGGGGACTGGCGCGTGGTGGCCGGACGGTGGTGACAACAATTCATCAGCCCTCAAGCCGGTTGTATTGGATGTTTGACAAGGTGGTTGTGTTATCTGACGGGTACCCGATTTATAGCGGGAAAACGGGTCGGGTCATGGAGTATCTTGAGTCCATTGGTTTTGTGCCTGCATTCAATTTCATGAACCCGGCAGATTTTCTACTTGACTTAGCTAATGGCATAGTTGCTGATGTTAAACAGGAAGATCCCGCGGATATTAATGGCACAATATTGGATAACCATAAGGATCAAGCTTCAGTCAAACAGTCCCTAGTTTCATCCTACAACAAGAATCTATATCCTGCTTTGAAAGAAGAGATTCGGCAAATTAACAGAGATCCAAGTGCTTTTATGTCAGGAACACCTAGAAGTTCAAAGAACCAATGGAACACCAGCTGGTGGGAGCAATTCAAGGTGCTGCTGAATAGAGGTTTAAAGGAGAGGAGGCATGAATCTTATTCAGGGTTAAGGATTTTCCAAGTCTTGTCTGTCGCAATTCTCTCTGGACTTCTGTGGTGGCACTCTGATCCCTCACACATACAAGATCAGGTAGGCCTGCTTTTCTTCTTCTCCATCTTCTGGGGATTCTTCCCTCTATTCAATGCCATCTTGGCATTTCCTCTGGAGAGGCCAATGCTGATAAAAGAAAGATCATCAGGCATGTACCATCTCTCCTCTTATTATATTGCCCGAATGGTCGGAGACTTACCAATGGAGCTGGTGCTCCCCACTATCTTTGTAGCTATCAGCTATTGGATGGGGGGTCTAAAGCCTTCACTGATCACGTTTGTGCTAACCCTCTTGATCATCCTCTTCAATGTGCTAGTCTCCCAAGGAATAGGCCTAGCACTTGGAGCCATTCTAATGGATTTGAAACAGGCCACAACTCTGGCCTCAGTCACCATGCTGGTGTTTTTGTTAGCTGGTGGTTACTACATTCAGAAAATGCCATCTTTCATAGCTTGGCTAAAGTATTTTTCATTCAGTCACTACTGCTACGAACTTCTGGTAGGTGTGCAGTATTCAAAAAACCAGGTTTATGAGTGTGGTTCAGGGCTGCATTGTAGGGTAGCTGATTTTCCAGCCATAAAGTGTCTAAATCTTGATAATATGTGGGGAGATGTGGCTGCATTGACTGTAATGTTTATTGGATACAGAATTGTGGCTTATTTAGCTTTGAGGATGAGGCTGCCTCACTGA 2070 0.471 MMPPDQETSTVVTTTVVTNIPAITNRSEKSSVHAELDGSSSTQLTDRKPSLDSGIPVHDQPTIVRFSNILHQSLRPVTLKFEDFSYSVTFPTKNNGCCVSSKEPKLTRTILNGVTGIVRPGEFMAMLGPSGSGKTTLLTALAGRLNGKVSGSITYNGHRFSSSMKRKTGFVSQDDVLYPHLTVLETLTYAALLRLPKTLSKEEKVEQAETVMAELGLTRCRNSPVGGGTSMFRGISGGEKKRVSIGQEMLVNPSLLLLDEPTSGLDSTTAQRIVAMLRGLARGGRTVVTTIHQPSSRLYWMFDKVVVLSDGYPIYSGKTGRVMEYLESIGFVPAFNFMNPADFLLDLANGIVADVKQEDPADINGTILDNHKDQASVKQSLVSSYNKNLYPALKEEIRQINRDPSAFMSGTPRSSKNQWNTSWWEQFKVLLNRGLKERRHESYSGLRIFQVLSVAILSGLLWWHSDPSHIQDQVGLLFFFSIFWGFFPLFNAILAFPLERPMLIKERSSGMYHLSSYYIARMVGDLPMELVLPTIFVAISYWMGGLKPSLITFVLTLLIILFNVLVSQGIGLALGAILMDLKQATTLASVTMLVFLLAGGYYIQKMPSFIAWLKYFSFSHYCYELLVGVQYSKNQVYECGSGLHCRVADFPAIKCLNLDNMWGDVAALTVMFIGYRIVAYLALRMRLPH 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0483 689 SMART AAA_5 120 313 IPR003593 GO:0016887
Glsi05g0483 689 FunFam ABC transporter G family member 22 98 329 - -
Glsi05g0483 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 79 335 IPR003439 GO:0005524
Glsi05g0483 689 MobiDBLite consensus disorder prediction 27 56 - -
Glsi05g0483 689 Pfam ABC-2 type transporter 292 357 IPR043926 GO:0140359
Glsi05g0483 689 Pfam ABC transporter 111 263 IPR003439 GO:0005524
Glsi05g0483 689 Gene3D - 96 329 IPR027417 -
Glsi05g0483 689 MobiDBLite consensus disorder prediction 27 49 - -
Glsi05g0483 689 ProSitePatterns ABC transporters family signature. 235 249 IPR017871 GO:0005524|GO:0016887
Glsi05g0483 689 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 46 680 - -
Glsi05g0483 689 CDD ABCG_EPDR 76 317 - -
Glsi05g0483 689 Pfam ABC-2 type transporter 425 631 IPR013525 GO:0016020|GO:0140359
Glsi05g0483 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 328 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0483 Glsi-ChrGlsi05 54780901 54785730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0483 43 311 Calmodulin-binding Proteins AT2G36910 28.214 1.54e-12 69.3