Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0468 ATGAATAACCTTCAGAGCTACCAAGAACAGCTTCTTTTTCTTCAGCAGCAGCAACAATGGTCTCTACCTCCGGTTCGCTCTTTCAACCCGGCCCGAGACCACGACCCGTTTCTTGTCCAGCCGCATCCGCCACCTTCGCCCTATGCCAGTTTTCTCAACAGAAGGGTCGTCAATCCTAATTCTTTCCAGTTTGCTTACGATCAGGGTCCAATACCATCTTCTGATCACCATCTCCGGATCATATCCGACACCCTTGGACCTGTGGTTCAACCCGGTTCTGCCTCCGCTCCCTTTGGCCTCCAAGCCGAGCTGGGCAAGATGACGGCTCAAGAAATCATGGACGCTAAGGCTCTGGCTGCTTCTAAGAGCCACAGCGAAGCTGAAAGAAGACGCAGAGAGAGAATCAATAACCATCTTGCCAAGCTCAGAAGCTTATTGCCCAGTTCCACCAAAACAGACAAAGCTTCATTGCTCGCAGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACGTCGTTAATAGCAGAGACGAGTCCAGTGCCCACAGAGGCTGACGAGCTAACAGTGGATGCTTCCGTTGAAAACGGCAAGTTTGTGATCAAAGTCTCGCTTTGCTGCGAAGACAGGTCTGATCTCTTGCCTGATCTCATCAAGACCTTGAAAGCTTTAAGGTTGAAAACCCTTAAGGCTGAAATCGCAACGCTCGGTGAGCGCGTGAAGAACGTTCTATTTATCTCTGGGGAAGAAGAAGATTTGAATAATAGCAATGGTGGGGATCAGGAACAAAGCCAGCAGTACTGTATTAAGTCAATACAAGAAGCACTCAAGGCAGTTATGGAGAAGAATGGTTCTGGGGATGATGCTTCTGGGAGTGTTAAGAGGCAAAGAACTAGTAATAATATCAATATCCTTGAACACAGTTATCGTCATGGGGTACGACGTCGTGTTGTCCCCACACAGACAGGGCCATCCTCTCTGGTAACCACACCACGACCACCTTCTCAGCTAGTACAATGGAGAATGGAGATTAGCCAAGGAATTGAAGGTCGTGCCACGCCATCAAATAGCTTCAATCACCGACGAGAGACTGAAAGAAAAGAGAGAAAAGTTCTGAGAGAGGAGGAAAAAAAAGAAGAAGAGGAAGATGCCATGTAA 1158 0.4793 MNNLQSYQEQLLFLQQQQQWSLPPVRSFNPARDHDPFLVQPHPPPSPYASFLNRRVVNPNSFQFAYDQGPIPSSDHHLRIISDTLGPVVQPGSASAPFGLQAELGKMTAQEIMDAKALAASKSHSEAERRRRERINNHLAKLRSLLPSSTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDASVENGKFVIKVSLCCEDRSDLLPDLIKTLKALRLKTLKAEIATLGERVKNVLFISGEEEDLNNSNGGDQEQSQQYCIKSIQEALKAVMEKNGSGDDASGSVKRQRTSNNINILEHSYRHGVRRRVVPTQTGPSSLVTTPRPPSQLVQWRMEISQGIEGRATPSNSFNHRRETERKERKVLREEEKKEEEEDAM 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0468 385 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 123 175 IPR036638 GO:0046983
Glsi05g0468 385 SMART finulus 125 174 IPR011598 GO:0046983
Glsi05g0468 385 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 168 IPR011598 GO:0046983
Glsi05g0468 385 MobiDBLite consensus disorder prediction 346 385 - -
Glsi05g0468 385 MobiDBLite consensus disorder prediction 356 379 - -
Glsi05g0468 385 Pfam Helix-loop-helix DNA-binding domain 122 168 IPR011598 GO:0046983
Glsi05g0468 385 PANTHER TRANSCRIPTION FACTOR BHLH30 19 304 IPR045847 GO:0003700|GO:0006355
Glsi05g0468 385 CDD bHLH_AtAIG1_like 114 192 - -
Glsi05g0468 385 Gene3D - 114 175 IPR036638 GO:0046983
Glsi05g0468 385 Coils Coil 361 384 - -
Glsi05g0468 385 FunFam transcription factor bHLH30 114 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0468 Glsi-ChrGlsi05 54542580 54548899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0468 1 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 56.233 2.16e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0468 HLH 7.7e-13 No_clan