Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0467 ATGCTGGTTGGGAGGAGGGTGATGAGCTGGAGAAGGGTGGCCAAGTCTCTGCAAGCTCTGGTAGCGCATGGCTTGCTCTTCTCATTCACGCTTCTGCTTGTTATAAAGCTTGACCATGTCGTTCATTACTCATGGTGGATCATATTTTCACCTCTATGGCTTTTTCATGCTGTTGTAGCACGGGGAAGGTTTTCCTTGCCTGCTCCTTCAATGCCTCATGATCGCCATTGGGCGCCTTGTCATGCTGTCGTGGGAACCCCTTTACTTGTTGCTTTTGAGCTACTTCTTTGTATACATCTTGAGATCAGTTATGTGGTAAATTTAAAGATTGTCTTCTTACCCCTATTGGCTTTTGAAGTGGCAATTTTGATTGATAACATCAGGATGTGTAGGGCTTTGATGCCTGGAGACGATGAAAATATGAGCGATGAAGCAATATGGGAAACCCTTCCTCACTTCTGGGTTGCAATATCCATGATCTTCTTCATTGCTGCTACAATTTTCACTCTTCTAAAGATTTGCGGCGATGTCGGTGCTCTAGGTTGGTGGGACTTATTTATAAACTATGGAATTGCTGAGTGCTTTGCCTTTCTTGTTTGTACAAAGTGGTACAATCCAACAATTCATGGAAAATGTCATATTGACAAGACAGATCCCTGTTCGTCATCATTTTCATCTTCATTTACTATAAGATACCTGGACTGGGATAGAGGCTTGGTTGTTTCCTCAGATGAAGATAGGCAGCAAAGTGGGCTATGCGGTCTGCAGGACATTGGTGGGCATATTATGAAGATTCCATTCATTGGATTCCAAATCCTGCTGTTTATGCATTTAGAGGGTACACCACCTAGTGCCAGAACTATGTCACGTTGGATTGTTTTTTCTCCCCTTTTCTTGTTGCAAGGAGCCGGGGTTTTATTTGCGGCTTATAGACTTGTGGAGAAATTAGTTCTTTTAGTTTACATTGGAGATGTTCCTGCAAGATATGCAGCTATAGCGACAAAAGCCCGTGATTGTTTTGGGTTCTTGCATCGTGGGTCAAGGTTGCTGGGTTGGTGGTCAATAGATGAAGGAAGTCGAGAGGAACAAGCTAGACTTTATTGTGCTGGCACTTCAGGGTATAATACTTTCTCCCCTGATGTAGTAAAGAAAATGCCTAAAGCAGATCTTGTTGAGGAGATCTGGAAACTACAAGCCGCGCTAGGTGAACAGACAGAGATTACACAATTTAGCGAGCAGGAGTATGAAAGACTCCAAAATGAAAAGATCTTATGTAGAGTTTGCTTTGAAGAGCAGATTAATGTGGTCCTGCTTCCATGCAGGCATCACGTTCTTTGCAGTACATGCTGCGAGAAGTGTAAAAGGTGCCCTATCTGCCGAGTCGTCATTGAAGAAAGAATGCCTGTATATGATGTATAG 1419 0.432 MLVGRRVMSWRRVAKSLQALVAHGLLFSFTLLLVIKLDHVVHYSWWIIFSPLWLFHAVVARGRFSLPAPSMPHDRHWAPCHAVVGTPLLVAFELLLCIHLEISYVVNLKIVFLPLLAFEVAILIDNIRMCRALMPGDDENMSDEAIWETLPHFWVAISMIFFIAATIFTLLKICGDVGALGWWDLFINYGIAECFAFLVCTKWYNPTIHGKCHIDKTDPCSSSFSSSFTIRYLDWDRGLVVSSDEDRQQSGLCGLQDIGGHIMKIPFIGFQILLFMHLEGTPPSARTMSRWIVFSPLFLLQGAGVLFAAYRLVEKLVLLVYIGDVPARYAAIATKARDCFGFLHRGSRLLGWWSIDEGSREEQARLYCAGTSGYNTFSPDVVKKMPKADLVEEIWKLQAALGEQTEITQFSEQEYERLQNEKILCRVCFEEQINVVLLPCRHHVLCSTCCEKCKRCPICRVVIEERMPVYDV 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0467 472 Pfam Zinc finger, C3HC4 type (RING finger) 423 465 - -
Glsi05g0467 472 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 8 472 - -
Glsi05g0467 472 Pfam Transmembrane Fragile-X-F protein 35 300 IPR019396 -
Glsi05g0467 472 ProSiteProfiles Zinc finger RING-type profile. 425 460 IPR001841 -
Glsi05g0467 472 FunFam Kinesin-like protein KIN-7D, mitochondrial 402 470 - -
Glsi05g0467 472 SUPERFAMILY RING/U-box 416 468 - -
Glsi05g0467 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 471 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0467 Glsi-ChrGlsi05 54518413 54534172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0467 8 472 C3H Transcription Factor Family AT1G73950 65.539 0.0 623