LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g0462	ATGGCCACTGTCTCAGCTCGAGGAATTGGGGTGGGAGTGACGAAGCTCCAACTCCACGAGTCCAAGCACAAGTCCCTCTTTTTTGGTCAGAGACTTAGGATCAAACCCTCTTTTGAATCGCAATGCAATGGAAGAATCGCCATCTCGAACCCAAAATCTTTGGTAGCTTTTGCATTAATGGGAGGTGAATGGGTCGATTCGATTCACAATCTTTTTGTGGGCGTTGGGGTAGGGCTTCCCTGCACGGTCATGGAGTGTGGCGACATAATCTACAGAAGCACTCTTCCCAAGTCCAATGGCTTGACAATCACTGGACCTGGGGTGGTTCTGGCTTTGGGTGCTCTGTCCTACCTCTGGGCCACGCCTGGTGTGGCTCCTGGATTCTTTGACATGTTTGTTCTTGCTTTTGTTGAGAGATTGTTCAGACCCACTTACAGAAAGGATGATTTTGTTCTGGGGAAGAAGTTGGGGGAGGGATCCTTTGGAGTGGTTTATAGAGCTTCATTGACCAAGAAGCCCTCTTCAAAGGAAGGTGACTTGGTCTTGAAGAAGGCTACTGAATATGGTGCAGTCGAAATTTGGATGAATGAGCGTGTACGAAGAGCTTGTGCAAACAGCTGTGCTGATTTTGTTTACGGCTTCCTTGAGAGTTCTTCGAAGAAAAGCCGTGAGTACTGGCTTATATGGCGGTTTGAAGGGGATGGCACTCTAGCAGACCTAATGCAGAGTAAAGAGTTCCCATACAATGTTGAAACAATGATTCTAGGCAAGGTTCAGGACTTGCCTAAGGGATTGGAAAGAGAAAATATAATCATTCAAACAATTATGAGGCAGCTCTTGTTTGCATTGGATGGTCTTCACTCTACTGGCATTGTGCATAGGGATATTAAGCCGCAGAACATTATTTTCTCTGAAGGGTCTCGTACATTCAAAATCATTGATCTTGGAGCTGCAGCAGATCTGCGCGTTGGCATCAACTATATTCCTAATGAGTTTCTTTTGGATCCAAGATATGCTGCGCCGGAGCAGTACATCATGAGCACGCAAACTCCCTCTGCACCCTCAGCTCCAGTTGCAACTGCACTCTCCCCAGTCCTATGGCAGCTGAATTTGCCAGACAGATTTGATATCTATAGTGCTGGTCTAATATTTCTTCAAATGGCATGCCCTGGATTACGCAGTGATAATAGCCTCATACAATTTAAACGCCAGTTGAAGAGGTGTGACTATGACTTGGTTGCATGGAGAAAAAGTGTAGAACCTCGTTGTAGCCCTGAACTCAGGAAGGGCTTTGAGCTGTTGGACTTAGATGGTGGAATAGGATGGGAACTTCTAACATCAATGGTTCGATACAAAGCACGGCAAAGACTCAGTGCCAAAGCAGCCTTAGCTCATCCCTACTTTGACAGGGAAGGCCTGTTGGCTCTTTCCTTCATGCAGAATCTAAGGTTGCAGCTCTTACGAGCAACACAGCAGGATTATGGGGAAGCAGCCAAGTGGATCATTCAGCTCATGGCGAAATCTGGAACAGCAAAAGATGGAGGATTCACTGAAGCTCAGCTCCAGGAACTAAGAGAAATTGAACCCAAGAAGAAGGCTAGTGCACAGAGAAACGCTCTAGCTTCAGCACTCAAACTTCAGAGGAAAGTTATAAGAACTTTGAATGAGAGTATGGATGAGCTTAGCAGACGCAGGAAAAGCCTTTGGTGGAGCAGATGGATCCCCAGAGAAGAATGA	1737	0.4629	MATVSARGIGVGVTKLQLHESKHKSLFFGQRLRIKPSFESQCNGRIAISNPKSLVAFALMGGEWVDSIHNLFVGVGVGLPCTVMECGDIIYRSTLPKSNGLTITGPGVVLALGALSYLWATPGVAPGFFDMFVLAFVERLFRPTYRKDDFVLGKKLGEGSFGVVYRASLTKKPSSKEGDLVLKKATEYGAVEIWMNERVRRACANSCADFVYGFLESSSKKSREYWLIWRFEGDGTLADLMQSKEFPYNVETMILGKVQDLPKGLERENIIIQTIMRQLLFALDGLHSTGIVHRDIKPQNIIFSEGSRTFKIIDLGAAADLRVGINYIPNEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYSAGLIFLQMACPGLRSDNSLIQFKRQLKRCDYDLVAWRKSVEPRCSPELRKGFELLDLDGGIGWELLTSMVRYKARQRLSAKAALAHPYFDREGLLALSFMQNLRLQLLRATQQDYGEAAKWIIQLMAKSGTAKDGGFTEAQLQELREIEPKKKASAQRNALASALKLQRKVIRTLNESMDELSRRRKSLWWSRWIPREE	578

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g0462	578	Gene3D	Phosphorylase Kinase; domain 1	136	230	-	-
	Glsi05g0462	578	FunFam	Serine/threonine-protein kinase STN7, chloroplastic	259	473	-	-
	Glsi05g0462	578	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	291	303	IPR008271	GO:0004672\|GO:0006468
	Glsi05g0462	578	ProSiteProfiles	Protein kinase domain profile.	150	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi05g0462	578	Gene3D	Transferase(Phosphotransferase) domain 1	260	472	-	-
	Glsi05g0462	578	Pfam	Protein kinase domain	151	343	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi05g0462	578	Coils	Coil	544	564	-	-
	Glsi05g0462	578	SMART	serkin_6	150	468	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi05g0462	578	PANTHER	SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED	64	553	-	-
	Glsi05g0462	578	CDD	STKc_SNT7_plant	154	468	-	-
	Glsi05g0462	578	SUPERFAMILY	Protein kinase-like (PK-like)	135	470	IPR011009	-
	Glsi05g0462	578	ProSitePatterns	Protein kinases ATP-binding region signature.	156	183	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g0462	Glsi-ChrGlsi05	54452793	54458016	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g0462	268	469	Core Cell Cycle Gene Families	AT2G38620	30.986	1.05e-16	78.2

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Group-Pl-4	Glsi05g0462		Pkinase	1.1e-19	CL0016