Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0454 ATGCAAACTCACTCTTTCTCCCACATATCCTCTAGTGGGAGTGCTAGCTGCTTAGAAGCAGATCAAGTTATAGATGATGAAGACTCCATCTCCCTCTCTCTTGCCCCTCCTGGCCAACCCAGTATCTCTGAAATTCATCATCGTCATCACCATCATCACTACTGTCACCAGAACCCTAGCTCTGATGACCAGAGCGGAGTCACGGTGGCCCTTCATATCGGCCTTTCCACCACCACTACCGCTGCAACAACAACAGCCATTAGTACTAGCAAACCTACAGATCAATTTGCTTCTTCTGCCCCTATTCAAGGTCAATATTGGATTCCTTCTCCTTCCCAAATCCTTATTGGACCCACCCAGTTCTCTTGCACTGTCTGCGATAAAACTTTCACCCGCTTCAATAACATGCAGATGCACATGTGGGGACATGGATCGCAGTATAGGAAAGGTCCGGAGTCGCTTCGAGGGGCGAAACCGGCGGCGTCGTCGATTCTGAGGCTGCCGTGCTATTGCTGCGCCGAGGGCTGCATTAACAACATCGATCATCCTCGGTCGAAGCCGCTGAAGGATTTCAGGACGCTTCAGACGCACTACAAGAGGAAGCACGGAGCGAAGCCGTTTGAGTGCAGGAAATGTGGAAAGCCATTCGCAGTGCGAGGGGATTGGAGGACACACGAGAAGAACTGCGGGAAGCTGTGGTTTTGCATTTGTGGGTCCGATTTTAAACACAAGAGGTCTCTTAAGGACCACGTCAAAGCGTTCGGAGACGGCCACGCTCCCCACACTGTGGAGAGCTGTGATTGGATGTTGGTTCGTGATCTAGAAAAGGAAGAAGATAATGAAAATGAAGACAACGAAGATGAAGATGATAATAATAATGAGGTATCGGTTTATGAAAACCATCATGGGTTGGCTCGACCCGAATCTAATGTTTATTTTTGA 942 0.4894 MQTHSFSHISSSGSASCLEADQVIDDEDSISLSLAPPGQPSISEIHHRHHHHHYCHQNPSSDDQSGVTVALHIGLSTTTTAATTTAISTSKPTDQFASSAPIQGQYWIPSPSQILIGPTQFSCTVCDKTFTRFNNMQMHMWGHGSQYRKGPESLRGAKPAASSILRLPCYCCAEGCINNIDHPRSKPLKDFRTLQTHYKRKHGAKPFECRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVKAFGDGHAPHTVESCDWMLVRDLEKEEDNENEDNEDEDDNNNEVSVYENHHGLARPESNVYF 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0454 313 SUPERFAMILY beta-beta-alpha zinc fingers 188 227 IPR036236 -
Glsi05g0454 313 FunFam Zinc finger protein WIP2 176 258 - -
Glsi05g0454 313 SMART c2h2final6 207 227 IPR013087 -
Glsi05g0454 313 SMART c2h2final6 121 143 IPR013087 -
Glsi05g0454 313 MobiDBLite consensus disorder prediction 277 293 - -
Glsi05g0454 313 Coils Coil 271 291 - -
Glsi05g0454 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 148 IPR013087 -
Glsi05g0454 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 207 227 IPR013087 -
Glsi05g0454 313 MobiDBLite consensus disorder prediction 277 313 - -
Glsi05g0454 313 SUPERFAMILY beta-beta-alpha zinc fingers 117 143 IPR036236 -
Glsi05g0454 313 Gene3D Classic Zinc Finger 120 143 - -
Glsi05g0454 313 ProSitePatterns Zinc finger C2H2 type domain signature. 123 143 IPR013087 -
Glsi05g0454 313 PANTHER ZINC FINGER PROTEIN WIP2 42 288 IPR043584 GO:0003700|GO:0010468
Glsi05g0454 313 MobiDBLite consensus disorder prediction 30 65 - -
Glsi05g0454 313 Gene3D Classic Zinc Finger 167 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0454 Glsi-ChrGlsi05 54277343 54278881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0454 26 263 C2H2 Transcription Factor Family AT1G13290 69.636 2.13e-117 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g0454 None None None