LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g0433	ATGAAGATTTTCGTGAAGACTCTGAAGGGCACTCACTTCGAAATTGAAGTGAAGCTGGAAGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTCCAGGGTGCGGATGTCTATCCTGCTGCACAGCAGATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGCACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTGTTGTAATTATGCTATCGAAGAGTAAGAGTTCATCCGGTGGGGGTTCTACTGCTTCAGCTGCACCTTCAGCCAAGACCCCATCAACAAGCGCAGCTCCTACTTCAACGTCAGTGTCAACCACACCTCAAGCTCCTGCTCCGACTGTGGCACAGCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCCCCTGCCCCTGCCCCTGCCCCCGCTCCTGTTCCTGCACCTACACCTACACCTGCACCGGCTCCTGTCACTTCGAGCACTGCTGTGTCAGAGTCTGATGTCTATGGGCAGGCAGCATCAAATCTTGTGGCTGGAAGTAACTTGGAGGAGACAATCCAGCAAATTCTTGTTGTAGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGCGAGCTGTTGAATATTTGTATACGGGTATCCCGGAGCAAGCTGAAGCTCCACCTGTGGGCCGAGTGCCTGCAAGTGCACAACCTGCAAATCCTTCTGTGCCAGATCCACAAGCTGCACAACCAGCACCCGTTCCTACAAGTGGACCTAACGCTAATCCCCTAGACCTTTTCCCCCAGGGCCTTCCCAATGTCGGTTCTGGTGCTGCTGGTGCAGGCACTCTAGATTTTCTACGCAATAGTCAACAGTTCCAAGCTTTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGTAAACAAAATCCTCATCTTATGAGATTGATTCAGGAGCACCAGACTGACTTTCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAACATATTAGGGCAGCTTGCTTCTGCCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGTCAAGCGATTGAACGGCTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAAGTGTACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATACACGAGTTTGAGGAATGA	1239	0.4972	MKIFVKTLKGTHFEIEVKLEDTVTEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGGGSTASAAPSAKTPSTSAAPTSTSVSTTPQAPAPTVAQPAPAPAPAPAPAPAPAPAPAPAPVPAPTPTPAPAPVTSSTAVSESDVYGQAASNLVAGSNLEETIQQILVVGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVGRVPASAQPANPSVPDPQAAQPAPVPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHIHEFEE	412

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g0433	412	SUPERFAMILY	Ubiquitin-like	1	80	IPR029071	-
	Glsi05g0433	412	SMART	uba_6	181	221	IPR015940	-
	Glsi05g0433	412	SMART	uba_6	368	405	IPR015940	-
	Glsi05g0433	412	Pfam	Ubiquitin family	3	76	IPR000626	GO:0005515
	Glsi05g0433	412	PRINTS	DNA repair protein Rad23 signature	379	393	IPR004806	GO:0006289
	Glsi05g0433	412	PRINTS	DNA repair protein Rad23 signature	394	409	IPR004806	GO:0006289
	Glsi05g0433	412	PRINTS	DNA repair protein Rad23 signature	313	335	IPR004806	GO:0006289
	Glsi05g0433	412	PRINTS	DNA repair protein Rad23 signature	362	378	IPR004806	GO:0006289
	Glsi05g0433	412	SMART	CBM	285	328	IPR006636	-
	Glsi05g0433	412	MobiDBLite	consensus disorder prediction	116	154	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g0433	Glsi-ChrGlsi05	53884039	53890317	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g0433	1	74	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.541	4.24e-09	52.8

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Glsi05g0433	05	53884039	53890317	Glsi05g0433	05	53884039	53890317	ECH

Showing 1 to 1 of 1 entries