Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0433 ATGAAGATTTTCGTGAAGACTCTGAAGGGCACTCACTTCGAAATTGAAGTGAAGCTGGAAGACACGGTTACTGAAGTGAAGAAAAATATAGAAACTGTCCAGGGTGCGGATGTCTATCCTGCTGCACAGCAGATGCTTATTCATCAAGGGAAAGTTCTCAAAGATGGCACTACCTTGGAGGAAAATAAAGTAGCTGAAAATAGTTTTGTTGTAATTATGCTATCGAAGAGTAAGAGTTCATCCGGTGGGGGTTCTACTGCTTCAGCTGCACCTTCAGCCAAGACCCCATCAACAAGCGCAGCTCCTACTTCAACGTCAGTGTCAACCACACCTCAAGCTCCTGCTCCGACTGTGGCACAGCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCTCCTGCCCCTGCCCCTGCCCCTGCCCCCGCTCCTGTTCCTGCACCTACACCTACACCTGCACCGGCTCCTGTCACTTCGAGCACTGCTGTGTCAGAGTCTGATGTCTATGGGCAGGCAGCATCAAATCTTGTGGCTGGAAGTAACTTGGAGGAGACAATCCAGCAAATTCTTGTTGTAGGTGGAGGGAGCTGGGATAGGGATACTGTAGTTCGTGCTCTACGTGCTGCTTACAATAATCCTGAGCGAGCTGTTGAATATTTGTATACGGGTATCCCGGAGCAAGCTGAAGCTCCACCTGTGGGCCGAGTGCCTGCAAGTGCACAACCTGCAAATCCTTCTGTGCCAGATCCACAAGCTGCACAACCAGCACCCGTTCCTACAAGTGGACCTAACGCTAATCCCCTAGACCTTTTCCCCCAGGGCCTTCCCAATGTCGGTTCTGGTGCTGCTGGTGCAGGCACTCTAGATTTTCTACGCAATAGTCAACAGTTCCAAGCTTTGCGAGCTATGGTGCAGGCAAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGTAAACAAAATCCTCATCTTATGAGATTGATTCAGGAGCACCAGACTGACTTTCTTCGCCTGATAAATGAACCAGTGGAAGGTGGTGAGGGGAACATATTAGGGCAGCTTGCTTCTGCCATGCCACAAGCAGTAACTGTCACCCCTGAGGAGCGTCAAGCGATTGAACGGCTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAAGTGTACTTTGCTTGCAACAAAAATGAGGAATTGGCTGCCAACTACCTTTTAGATCACATACACGAGTTTGAGGAATGA 1239 0.4972 MKIFVKTLKGTHFEIEVKLEDTVTEVKKNIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFVVIMLSKSKSSSGGGSTASAAPSAKTPSTSAAPTSTSVSTTPQAPAPTVAQPAPAPAPAPAPAPAPAPAPAPAPVPAPTPTPAPAPVTSSTAVSESDVYGQAASNLVAGSNLEETIQQILVVGGGSWDRDTVVRALRAAYNNPERAVEYLYTGIPEQAEAPPVGRVPASAQPANPSVPDPQAAQPAPVPTSGPNANPLDLFPQGLPNVGSGAAGAGTLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQTDFLRLINEPVEGGEGNILGQLASAMPQAVTVTPEERQAIERLEAMGFDRALVLEVYFACNKNEELAANYLLDHIHEFEE 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0433 412 SUPERFAMILY Ubiquitin-like 1 80 IPR029071 -
Glsi05g0433 412 SMART uba_6 181 221 IPR015940 -
Glsi05g0433 412 SMART uba_6 368 405 IPR015940 -
Glsi05g0433 412 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Glsi05g0433 412 PRINTS DNA repair protein Rad23 signature 379 393 IPR004806 GO:0006289
Glsi05g0433 412 PRINTS DNA repair protein Rad23 signature 394 409 IPR004806 GO:0006289
Glsi05g0433 412 PRINTS DNA repair protein Rad23 signature 313 335 IPR004806 GO:0006289
Glsi05g0433 412 PRINTS DNA repair protein Rad23 signature 362 378 IPR004806 GO:0006289
Glsi05g0433 412 SMART CBM 285 328 IPR006636 -
Glsi05g0433 412 MobiDBLite consensus disorder prediction 116 154 - -
Glsi05g0433 412 FunFam UV excision repair protein RAD23 B 278 343 - -
Glsi05g0433 412 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 401 - -
Glsi05g0433 412 FunFam UV excision repair protein RAD23 1 80 - -
Glsi05g0433 412 MobiDBLite consensus disorder prediction 77 161 - -
Glsi05g0433 412 FunFam UV excision repair protein RAD23 homolog 174 224 - -
Glsi05g0433 412 CDD Ubl_Rad23 1 74 - -
Glsi05g0433 412 SMART ubq_7 1 75 IPR000626 GO:0005515
Glsi05g0433 412 Gene3D - 174 224 - -
Glsi05g0433 412 SUPERFAMILY UBA-like 349 410 IPR009060 GO:0005515
Glsi05g0433 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 406 IPR015940 -
Glsi05g0433 412 Gene3D - 1 80 - -
Glsi05g0433 412 NCBIfam UV excision repair protein Rad23 1 411 IPR004806 GO:0006289
Glsi05g0433 412 Gene3D - 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Glsi05g0433 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 179 222 IPR015940 -
Glsi05g0433 412 Pfam XPC-binding domain 287 342 IPR015360 GO:0003684|GO:0006289|GO:0043161
Glsi05g0433 412 Gene3D - 360 407 - -
Glsi05g0433 412 MobiDBLite consensus disorder prediction 77 115 - -
Glsi05g0433 412 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Glsi05g0433 412 SUPERFAMILY XPC-binding domain 283 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Glsi05g0433 412 MobiDBLite consensus disorder prediction 230 265 - -
Glsi05g0433 412 Pfam UBA/TS-N domain 181 219 IPR015940 -
Glsi05g0433 412 Pfam UBA/TS-N domain 368 403 IPR015940 -
Glsi05g0433 412 FunFam UV excision repair protein RAD23 homolog 359 407 - -
Glsi05g0433 412 MobiDBLite consensus disorder prediction 247 261 - -
Glsi05g0433 412 SUPERFAMILY UBA-like 178 234 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0433 Glsi-ChrGlsi05 53884039 53890317 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0433 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.541 4.24e-09 52.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0433 05 53884039 53890317 Glsi05g0433 05 53884039 53890317 ECH