Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0427 ATGTCCGAGCCTCGGAAGCAACCGTCAAATCACATCTGCAAAAAGATGAAGCAAAAGCCAAATCCCATTGAGTCCAAAATGATGAGAAAGCTACGCATAATCTGTGATGATCCTGAAGCGACTGATTCATCTTCAAGCGAAGATGAAGGAGAAAAGATTCAGAAGCCAAGGAAGATAAAACGAATTGTTCGTGAGCTCAGTCTTCCTCTTGTTTCAGTCAACTCTAACCCCATTGAAACCGAGACTTCATTTCAGGAAAGCAACAATGGAGGAGTCAAGGCGAACTTCAAGTACCCAGAAAGTCAAACCCCAAATAGGAAGAGGGTTTGTACCAAAACCCCATCATCAAGGAACTCGTCTTCAAAGTTCAGAGGCGTTCGACAGAGAAAATGGGGAAAATGGGCTGCTGAGATTCGTGATCCATTCAAGGGTGTCCGAATCTGGTTGGGCACTTACAATACTGCAGAGGAGGCTTCCCAAGCCTATGAAACAAAAAAGCTTGAATTTGAAGCCATGGCCAAGGCTCAATCTGAGAGAAGTAACAATGTTTCTTCTGTTGTAGCTATAGCTGCCTCAGCTTCTGTATCAGACAACAAATCTGCTACTTCCGAGGACTCAGAGAGCGTCTTCTCGCAAACTTCACCATCCTCCGTACTGGAACTCGATACATCGTCTTCTACCTCTATTAAAAATTCCGAAACTTCGAACAAAGAAGAAGCTCTTGAGACCAATGACTTGCAGAGTGAATTTGCAGAACTGCAAATACCCGATTTGAGCTTCCTGAACGCCCTGCCCCCGCCCCCAATATCTACTGCTGCAGCTGGTTCAGACGCTAACAATCTCGGATTTGAGCTGGATTGGAACGTGTTCGATGATTTTGGTGTGGGTTTTGATGATCCTTGCGGCTTGGAGGACATTCAAATTTGTGGGTTTGATGACAATAACCCCAGTGAGCTACCTGATTTCGATTTTGATCTTTGTGCTGACGAGTTTGCTGGTTGGACTGAGGAGCCCCTCAATATACCTTGCGTATAA 1035 0.4502 MSEPRKQPSNHICKKMKQKPNPIESKMMRKLRIICDDPEATDSSSSEDEGEKIQKPRKIKRIVRELSLPLVSVNSNPIETETSFQESNNGGVKANFKYPESQTPNRKRVCTKTPSSRNSSSKFRGVRQRKWGKWAAEIRDPFKGVRIWLGTYNTAEEASQAYETKKLEFEAMAKAQSERSNNVSSVVAIAASASVSDNKSATSEDSESVFSQTSPSSVLELDTSSSTSIKNSETSNKEEALETNDLQSEFAELQIPDLSFLNALPPPPISTAAAGSDANNLGFELDWNVFDDFGVGFDDPCGLEDIQICGFDDNNPSELPDFDFDLCADEFAGWTEEPLNIPCV 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0427 344 Pfam AP2 domain 121 170 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 MobiDBLite consensus disorder prediction 81 122 - -
Glsi05g0427 344 SUPERFAMILY DNA-binding domain 121 169 IPR016177 GO:0003677
Glsi05g0427 344 MobiDBLite consensus disorder prediction 196 234 - -
Glsi05g0427 344 MobiDBLite consensus disorder prediction 81 124 - -
Glsi05g0427 344 MobiDBLite consensus disorder prediction 1 56 - -
Glsi05g0427 344 MobiDBLite consensus disorder prediction 17 37 - -
Glsi05g0427 344 CDD AP2 121 162 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 SMART rav1_2 122 176 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 27 230 - -
Glsi05g0427 344 MobiDBLite consensus disorder prediction 196 242 - -
Glsi05g0427 344 ProSiteProfiles AP2/ERF domain profile. 122 184 IPR001471 GO:0003700|GO:0006355
Glsi05g0427 344 Gene3D AP2/ERF domain 121 177 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0427 Glsi-ChrGlsi05 53757914 53758948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0427 22 343 AP2-EREBP Transcription Factor Family AT1G68550 35.817 5.15e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Glsi05g0427 AP2 1e-10 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0427 05 53757914 53758948 Glsi05g0427 05 53757914 53758948 ECH