Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0412 ATGCTTGTCTTGGTATCTTTCTGGAGACCTGTGGAGAACCCATTAGACCTCAACAATTTGCCTGATGAGTACTCTAGAGATGGCAAACAAATCCTCGAAGATAGCTCCTCTTCTGGGTGCAGGAAAAAGAAAAGCGGCGGGAAGGATGGAAAAGACGAGTGTGAGAAGGTCTATGAGTGTAGATTTTGTTCCCTCAAGTTCTGCAAGTCTCAGGCTCTTGGGGGACACATGAACCGTCACCGCCAAGAAAGGGAAACCGAGACGCTGAACCATGCTCGTCAGCTGGTCTTCCGTAACGATCATAACATAGCCGCCCAAGGGGCCCCTCACCTAGGGTGCTGTCAACCAATAGCACCAGGGAGCTATCATCCAGCAGACCCAACAATGCCTCTGAGGTTTCCAAGATACTTCTCAGCTGGTTCATCCTCCACCCACATACCTCCACCCCCACCACCACCACCTCCTCAGCCATCTCAACCATACTTATACGCCTCACCGTCACGACCAGTCACTTTTCCCTCACCCTACTCTCAGCATCCAGTGAATGATTACTATGTGGGTCATGTCATGAGTAGCCACCACAACTATGTGGGTGGTGCAGCAGCAGATTCTAGCTATACTTGCATTGGTGCACCAGTAGGACAAGGGTTGGGTGGTGGTGGTGGTAAGGACGGGTCACTGCAGAGTCAGGAAGAGGGGTTGAATTGGGGAAGGAGCTATTCAGGAGCACAGCAGCGTTTGGATCCTCCTTCAGCGATCAATCGGTTTCAAGATGGGTTCTAA 783 0.5121 MLVLVSFWRPVENPLDLNNLPDEYSRDGKQILEDSSSSGCRKKKSGGKDGKDECEKVYECRFCSLKFCKSQALGGHMNRHRQERETETLNHARQLVFRNDHNIAAQGAPHLGCCQPIAPGSYHPADPTMPLRFPRYFSAGSSSTHIPPPPPPPPPQPSQPYLYASPSRPVTFPSPYSQHPVNDYYVGHVMSSHHNYVGGAAADSSYTCIGAPVGQGLGGGGGKDGSLQSQEEGLNWGRSYSGAQQRLDPPSAINRFQDGF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0412 260 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Glsi05g0412 260 MobiDBLite consensus disorder prediction 30 52 - -
Glsi05g0412 260 MobiDBLite consensus disorder prediction 134 166 - -
Glsi05g0412 260 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Glsi05g0412 260 FunFam Zinc finger protein STAMENLESS 1 33 106 - -
Glsi05g0412 260 SUPERFAMILY beta-beta-alpha zinc fingers 55 86 IPR036236 -
Glsi05g0412 260 MobiDBLite consensus disorder prediction 228 251 - -
Glsi05g0412 260 Gene3D Classic Zinc Finger 34 109 - -
Glsi05g0412 260 MobiDBLite consensus disorder prediction 144 162 - -
Glsi05g0412 260 PANTHER ZINC FINGER PROTEIN JAGGED 34 236 IPR045320 GO:0003700
Glsi05g0412 260 MobiDBLite consensus disorder prediction 219 260 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0412 Glsi-ChrGlsi05 53289718 53292281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0412 13 216 C2H2 Transcription Factor Family AT1G13400 47.664 4.59e-36 125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0412 05 53289718 53292281 Glsi05g0412 05 53289718 53292281 ECH