Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0409 ATGTCAGAATTAGTGAAGCTAAAACAGACAGTTGACCCATATGGTGGCCCACCACGTCAATGGCAACATAAAGATTTCCCTCCTTTAGATCATGTCATCTCAGTAATGCCAAAGCCATCACCACCTCCACCAGTTGCATCACGGCCTCCCTACCAGTATGTCCATAGAGGAATTCTTCCTAATGGGAAGGAGGTGGCTGTCAAGCAGCTAATGGCTGGAAGTGAGCCGAGCGAGCGTGAATTTCAAGCTGAGGTAGAGATAATTAGCCGGGTTCATCACAAACATCTTATTTCTTTGGTTGGATACTGCATCACTAGAACCCAAAGGTTGCTTGTTTATGAATTTGTTCCTAACAATACATTGGAGTTCTACTTACATGGAAAAGGGCGACCCACTATGGATTGGCCCACAAGACTGAAAATTACTTTAGGATCTGCAAAAGGACTGGCATATCTTCATGAGGATTGTTATCCCAAGATAATCCATCGTGATATCAAAGCTGCTAACATACTTTTTGGATTTCAAGTTTGA 531 0.4294 MSELVKLKQTVDPYGGPPRQWQHKDFPPLDHVISVMPKPSPPPPVASRPPYQYVHRGILPNGKEVAVKQLMAGSEPSEREFQAEVEIISRVHHKHLISLVGYCITRTQRLLVYEFVPNNTLEFYLHGKGRPTMDWPTRLKITLGSAKGLAYLHEDCYPKIIHRDIKAANILFGFQV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0409 176 Pfam Protein tyrosine and serine/threonine kinase 61 172 IPR001245 GO:0004672|GO:0006468
Glsi05g0409 176 MobiDBLite consensus disorder prediction 1 20 - -
Glsi05g0409 176 Gene3D Phosphorylase Kinase; domain 1 50 116 - -
Glsi05g0409 176 SUPERFAMILY Protein kinase-like (PK-like) 52 173 IPR011009 -
Glsi05g0409 176 SMART tyrkin_6 54 176 IPR020635 GO:0004713|GO:0006468
Glsi05g0409 176 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 53 172 IPR047117 -
Glsi05g0409 176 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
Glsi05g0409 176 ProSiteProfiles Protein kinase domain profile. 1 176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0409 176 Gene3D Transferase(Phosphotransferase) domain 1 117 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0409 Glsi-ChrGlsi05 53197658 53198394 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0409 54 172 Trihelix Transcription Factor Family AT1G70460 69.748 3.64e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Glsi05g0409 PK_Tyr_Ser-Thr 5.4e-22 CL0016