Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0402 ATGGAGAATAATTCCTTCACCAATATTCAAGAACTCATGACTTTCTCCAATGCCACCTTTTGGGATCAACAGCTTCATCTCTCTTCTGAACAGATCACTAATCTTCAGTCTAAGGATCACCCAAATCCTTTTTCACTGATTCAGTCATCAGGAGCCTCTCCCTTCGGTACCAGTTATGATCGCGAACAAGCGGAAACTGTGCCTATATCAGAATGCTTAGAGGATTTTTCTCCTCCGTTTTCTGCAACTGGTTTTGCTGCTAAGAACAAGAGCCTCGTTGGAAACAAAAGGAAGAGAAACAATAACAGATTTGGAGTTGAAGAGAAACCGAAAGAAGTCGTTCTTGTAAGGGCAAAAAGAGGCCAGGCAACAGATAGCCACAGTTTAGCAGAAAGGGTGAGAAGAGGGAAAATCAATGAGAAGCTGAGATGCTTGCGGGATTTGGTTCCAGGGTGCTACAAGGCAATGGGAATGGCAGTAATGTTGGATGTGATAATAGATTATGTTCAGTCGCTGCAGCATCAGATTGAGTTTCTCTCCATGAAGCTTACAGCAGCAAGTATGCATTTTGATTTTAACACTTCTGAGATGGATGACACCGAAACCTTGCAGAGGAATACTGGTACATGCGAAGTCCAAGAGATGGAGAAGATGGAAGAAGGATTTGGAAGGTACCCTTATTTCAATCCAACATGGCCACTTCAGTGA 708 0.4294 MENNSFTNIQELMTFSNATFWDQQLHLSSEQITNLQSKDHPNPFSLIQSSGASPFGTSYDREQAETVPISECLEDFSPPFSATGFAAKNKSLVGNKRKRNNNRFGVEEKPKEVVLVRAKRGQATDSHSLAERVRRGKINEKLRCLRDLVPGCYKAMGMAVMLDVIIDYVQSLQHQIEFLSMKLTAASMHFDFNTSEMDDTETLQRNTGTCEVQEMEKMEEGFGRYPYFNPTWPLQ 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0402 235 Gene3D - 119 192 IPR036638 GO:0046983
Glsi05g0402 235 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 122 172 IPR011598 GO:0046983
Glsi05g0402 235 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 120 191 IPR036638 GO:0046983
Glsi05g0402 235 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 88 201 IPR024097 GO:0006355
Glsi05g0402 235 SMART finulus 128 178 IPR011598 GO:0046983
Glsi05g0402 235 Pfam Helix-loop-helix DNA-binding domain 126 173 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0402 Glsi-ChrGlsi05 53029927 53033134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0402 108 234 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 64.341 3.75e-50 161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Glsi05g0402 HLH 6.1e-05 No_clan