Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0400 ATGTCTGCGGTCACAAAGAGAGGTTTGGGCTCCATTGATGAAGAAATTGAGCTCAGAAGAGGCCCTTGGACTCTTGAAGAAGACAGTCTTCTCATTCACTATATCACTTGCCATGGCGAAGGTCGTTGGAATATGTTAGCCAAAAGTGCAGGTTTGAAGAGGACTGGGAAAAGCTGCAGACTCAGGTGGCTGAACTACCTTAAACCAGATATCAAGAGAGGGAACCTCACCCCACAAGAACAGCTCTTGATCCTTGAACTCCATTCTAAGTGGGGCAACAGGTGGTCAAAAATTGCTCAGCATCTGCCAGGAAGAACAGACAATGAGATCAAGAACTACTGGAGAACAAGGGTACAGAAGCAGGCACGCCAGCTTAACATCGAGTCTGGTAGCCAGAGATTTATGGATGCTGTTCGGTGCTTATGGATGCCAAGATTGCTTCAAAAGATGGAGCAAAACTCTTCCTCTTCCTCTTCTTCTCTGACTAACATGAATTTTGAGAATTCTGCAGTAGCAGAAGTAGAAGCTTCAATGTTACCCATCTCTAATGTCCCTTCTCTGTCTCCTCCATGTCAAAGGGAACTCACAGATGCAGCAAATCATTCAAGCTACATGTCCAACCCCAGCAATTTCTGCCCAGATTCCTTGCAATTTCCACAGATACAAGAAATAGCAGAAAACCCAACAAGTGCTCCCTTTGTGTTTGAGAAAAATGCTCAATGCAATCCTGTTCAAGAGAGTTGGTTCATGAATCCCAATAGCTATGGCGGCATGGAAGGTCTAAACATGGAACCCCTTTCAATAATGGAAGCTTACGACATTTCCCAGGTTGATTTTCAGACTGCAGAGAGTGACTGGTTTCCGAACACCATGGGTGATGCTTTGTGGAATCTGGATGCAATGTGA 906 0.4492 MSAVTKRGLGSIDEEIELRRGPWTLEEDSLLIHYITCHGEGRWNMLAKSAGLKRTGKSCRLRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKQARQLNIESGSQRFMDAVRCLWMPRLLQKMEQNSSSSSSSLTNMNFENSAVAEVEASMLPISNVPSLSPPCQRELTDAANHSSYMSNPSNFCPDSLQFPQIQEIAENPTSAPFVFEKNAQCNPVQESWFMNPNSYGGMEGLNMEPLSIMEAYDISQVDFQTAESDWFPNTMGDALWNLDAM 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0400 301 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 16 191 IPR044676 GO:0003700|GO:0006355|GO:0043565
Glsi05g0400 301 SMART sant 19 69 IPR001005 -
Glsi05g0400 301 SMART sant 72 120 IPR001005 -
Glsi05g0400 301 FunFam Myb transcription factor 20 72 - -
Glsi05g0400 301 FunFam MYB transcription factor 77 140 - -
Glsi05g0400 301 ProSiteProfiles Myb-like domain profile. 15 67 IPR001005 -
Glsi05g0400 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 67 IPR017930 -
Glsi05g0400 301 CDD SANT 77 116 IPR001005 -
Glsi05g0400 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Glsi05g0400 301 CDD SANT 22 67 IPR001005 -
Glsi05g0400 301 Pfam Myb-like DNA-binding domain 20 67 IPR001005 -
Glsi05g0400 301 Pfam Myb-like DNA-binding domain 73 116 IPR001005 -
Glsi05g0400 301 SUPERFAMILY Homeodomain-like 18 114 IPR009057 -
Glsi05g0400 301 Gene3D - 17 73 - -
Glsi05g0400 301 Gene3D - 76 118 - -
Glsi05g0400 301 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0400 Glsi-ChrGlsi05 52950593 52951962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0400 17 159 MYB Transcription Factor Family AT1G68320 83.217 3.16e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Glsi05g0400 Myb_DNA-binding 1.7e-13 CL0123