Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0390 ATGGCAACGCCAGACGGAGGTGGGGGTGTGGCTATAATGTCTGGTACCGTGAGCTCAGTTGATTCCTCACCTTCGAAGACTTGCCTGAAGAACTCGCTCCTGAAATCTCCGATTCTGATATTCTCTTTCTTCCACAAGGCTATTCGCTCTGAGCTCGATAGCCTCCATCGAGCCGCCTTGGATTTTGCCACTAACCAACAAGCTGTCTCTGACGTCAAACCCTTGTTTGACCGCTGTCACTTTCTTCGTACTATCTATAAGCACCATTGCAATGCGGAGGACGAGGTCATATTTGCTGCCTTAGATATACGTGTGAAGAATGTTGCACGCACGTATTTCTTGGAACATGAGGGAGAGGGTCTTCTGTTTGATCAGTTGTTCAAGCTGCTAAATTCTAATTTGCTAAATGAAGAGAGCTACCGAAGAGAATTAGCTTCCTGTACTGGAGCCCTTCGAACATCAATTAGCCAGCATATGTTTAAGGAAGAGGAGCAGGTCTTCCCCTTGGTTATTGAGAAGTTTTCAGTTGAAGAGCAGGCATCATTGGTGTGGCAATTTCTTTGCAGCTTACCAGTTAAAATGATGGCAGAATTTCTTCCCTGGCTAGCTCTTTATATATCAGCCGATGAACATCAGGATATGCTTAGGTGCTTATGCACAATAATTCCTGAAGAGAAGCTTCTTCAACAGGTCGTTATTGGATGGATGGAAGGGGTAAAGATTAAATGTAGTAGCTGCACAAATGATACCAAGATTCATTGTCAGGATGCTGGGACAAGTGGCTTAACCAGTCATTCGGAAAAGATGTATTGTGCATGTGAACCTTCCAAAACTGGAAAAAGGAAATGGATGGAGCTAAGCTTGGACCCCACCAGTTCTGCTCTATCATGCCCTATAGATGAAATATTACTTTGGCATAAGGCTATAAAACAAGAGTTGAGTGATTTAACTGAGGCCGTTAGGAAGATACAACTTTCTGGAATTTCTGATTTATCTGCATTTAATGGGAGGCTGCAATTCATTACTGAAGTCTGCATCTTTCATAGCATTGCGGAGGACAAAGTTATATTCCCTGCAATAGATGCAGAGCTTTCTTTTGTTCATGAGCATGCAGATGAAGAACTTCAGTTTGACAAGCTCAGGTGCCTGATAGAAAGCATCCAAAGTGCTGGAGCTGACGCATCATCTGCTGAATATTATATAGAGTTGAGGTCTCATGCTGAACAAATAATGGACACCATACTGAATCACTTTGAAAAAGAGGAAGCTCAGGTTCTACCTCTTGCACGAAAACTTTTTAGTCCCCAAAGACAGCGAGAATTACTTTATGAAAGTTTGTGCTTAATGCCCTTGAAATTGATTGAGTCTGTAATACCATGGCTGGTAGGATTTCTAAGTGAAGAAGAAGCAAAGTCCTTTCTTTGGAATATGTATATGGCAGCCCCAGCAACAGATTATGCTTTAATTACACTTTTTTCTGGTTGGGCATGCAAAAGAAATTCCACGGACAATGGTTTCTCTTCAAGTATGACAGGTTTGTGTCCTGCTAGGAAACTGTTGGGAACAGAAATCGCTAGCCAATCATTTTGCATATGTGCATCTTCATTCATTCCCGATAAAAGATCTTCATCCATTCAACAAGATGATGCAGATGAAAGTAGTGGGCCAGTCAAGCATGGAAAACCAGAACCAAGGGAAGAGAAAGCTGTTTCTCACCTCACGGGAACTAGAGAATATCTTAACTTACCTGGTAGTCAGTCTTGCTGTGTCCCTGGATTAGGGGTAAATGCAAGTCATCTAGGAGTGGTTCCTTTAGTCCCAACAAAATCTTTGCGATCCTTATCTGATTGTCCTTCTGCTCCTTCCCTTAACTCCAGTCTTTTTGTCTGGGAAACAGATATAGTCTCTGCTGACAGTGGATTTAAAACACGGCCTATTGATAACATATTTAAATTCCATAAAGCCATTTGTAAAGACTTGGAGTATTTAGATGTTGAATCTGGAAAACTTAATGATTGTGATCAAACTTTCCTGAGGCAGTTCACTGGTAGATTTCGCTTATTGTGGGGTTTGTACAGAGCTCACAGCAATGCAGAGGATGATATAGTATTTCCCGCATTAGAATCAAAAGAAACTCTTCACAATGTGAGCCACTCTTATACTTTAGACCACAAGCAAGAAGAAAAGTTATTTGAAGATATTTCATCTGGACTCTCTGAGCTTACTCAATTACGTAAATTCTTGAATAATAAGAACTCATCTGGCCATTTAACCAGCTGCTACTCTGGTTGTTCTGATAACATGCGAAAGTACAATGAGCTGGTTACAAAGATTCAGGGCATGTGTAAATCTATCAGAGTGACACTAGATCAACATATTTTCAGGGAGGAGCTTGAATTATGGCCATTGTTTGATAGACATTTTTCTGTGGAAGAACAGGATAAAATTGTTGGTCGTATAATTGGTACTACTGGGGCAGAGGTTCTCCAATCGATGCTGCCATGGGTAACTTCTGCGCTCACACAGGAGGAGCAAAACAAAATGATGGACACATGGAAGCAGGCTACCAAAAACACCATGTTCAGTGAGTGGCTTAATGAATGGTGGGAAGGACCTGCTTCATTTTCAAATACTACTACGCCTACTGACTGTGTTTCACTAGATGTTGATGCCTATGAAAGTTTGGACCATAGCTTTCAAGCTTTCAGGCCCGGGTGGAAAGATATATTCAGGATGAACCAGAATGAACTTGAATCAGAAATAAGAAAAGTTTCTCGAGATTCAACTCTTGATCCAAGAAGAAAATCATATCTTATTCAAAATTTAATGACCAGTCGCTGGATAGCTTCTCAGCAGAAGTCATCTCAAGCAACAGCAGGCAAGTTTACAAATGGAGAACATTTACTTGAAAGTTCACCTTCGTTTCATGATCCAGAGAAAAAAGTCTTTGGTTGCGAGCATTACAGAAGAAATTGTAAACTCCTTGCTGCTTGCTGTGGAAGGCTATTCTCCTGCAGGTTCTGCCATGACAAAGTCAGTGACCATTCGATGGATAGGAAGGCTACTACTGAGATGATGTGCATGCGCTGCCTGCAATTACAGCCAATTGGACCAGTTTGTTCAACGCCTTCCTGTGGTGGTCTCTCAATGGCAAAGTACTATTGTAGTATTTGCAAATTATTTGATGATGAAAGGACAGTTTATCATTGCCCTTTCTGCAATCTATGCCGTGTGGGGAAGGGGCTTGGTGTTGATTCCTTTCATTGCATGCAGTTACATCTGTCAGAGCTCTTCCTTGTGGCCATTTCATGCATTCCACTTGTTTTCAGGCATATACATGTAGTCACTACACCTGTCCAATTTGTCGCAAATCCTTGGGAGATATGGCGGTTTATTTTGGCATGCTTGATGCTCTATTGGCTTCTGAGGAACTCCCGGAAGAATATCGGAATAACCGTCAGGATATACTTTGCAATGACTGCGATAAGAAGGGGACAGCACGATTCCATTGGCTATACCATAAATGTGGATTTTGTGGATCTTATAATACAAGGGTAA 3558 0.4154 MATPDGGGGVAIMSGTVSSVDSSPSKTCLKNSLLKSPILIFSFFHKAIRSELDSLHRAALDFATNQQAVSDVKPLFDRCHFLRTIYKHHCNAEDEVIFAALDIRVKNVARTYFLEHEGEGLLFDQLFKLLNSNLLNEESYRRELASCTGALRTSISQHMFKEEEQVFPLVIEKFSVEEQASLVWQFLCSLPVKMMAEFLPWLALYISADEHQDMLRCLCTIIPEEKLLQQVVIGWMEGVKIKCSSCTNDTKIHCQDAGTSGLTSHSEKMYCACEPSKTGKRKWMELSLDPTSSALSCPIDEILLWHKAIKQELSDLTEAVRKIQLSGISDLSAFNGRLQFITEVCIFHSIAEDKVIFPAIDAELSFVHEHADEELQFDKLRCLIESIQSAGADASSAEYYIELRSHAEQIMDTILNHFEKEEAQVLPLARKLFSPQRQRELLYESLCLMPLKLIESVIPWLVGFLSEEEAKSFLWNMYMAAPATDYALITLFSGWACKRNSTDNGFSSSMTGLCPARKLLGTEIASQSFCICASSFIPDKRSSSIQQDDADESSGPVKHGKPEPREEKAVSHLTGTREYLNLPGSQSCCVPGLGVNASHLGVVPLVPTKSLRSLSDCPSAPSLNSSLFVWETDIVSADSGFKTRPIDNIFKFHKAICKDLEYLDVESGKLNDCDQTFLRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKQEEKLFEDISSGLSELTQLRKFLNNKNSSGHLTSCYSGCSDNMRKYNELVTKIQGMCKSIRVTLDQHIFREELELWPLFDRHFSVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQEEQNKMMDTWKQATKNTMFSEWLNEWWEGPASFSNTTTPTDCVSLDVDAYESLDHSFQAFRPGWKDIFRMNQNELESEIRKVSRDSTLDPRRKSYLIQNLMTSRWIASQQKSSQATAGKFTNGEHLLESSPSFHDPEKKVFGCEHYRRNCKLLAACCGRLFSCRFCHDKVSDHSMDRKATTEMMCMRCLQLQPIGPVCSTPSCGGLSMAKYYCSICKLFDDERTVYHCPFCNLCRVGKGLGVDSFHCMQLHLSELFLVAISCIPLVFRHIHVVTTPVQFVANPWEIWRFILACLMLYWLLRNSRKNIGITVRIYFAMTAIRRGQHDSIGYTINVDFVDLIIQG 1185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0390 1185 Pfam CHY zinc finger 985 1060 IPR008913 GO:0008270
Glsi05g0390 1185 Pfam Hemerythrin HHE cation binding domain 645 803 IPR012312 -
Glsi05g0390 1185 Pfam Hemerythrin HHE cation binding domain 45 170 IPR012312 -
Glsi05g0390 1185 Pfam Hemerythrin HHE cation binding domain 298 429 IPR012312 -
Glsi05g0390 1185 MobiDBLite consensus disorder prediction 544 573 - -
Glsi05g0390 1185 ProSiteProfiles Zinc finger CHY-type profile. 978 1047 IPR008913 GO:0008270
Glsi05g0390 1185 CDD Hr-like 300 427 - -
Glsi05g0390 1185 CDD Hr-like 40 168 - -
Glsi05g0390 1185 ProSiteProfiles Zinc finger CTCHY-type profile. 1050 1112 IPR017921 -
Glsi05g0390 1185 SUPERFAMILY CHY zinc finger-like 977 1041 IPR037274 GO:0008270
Glsi05g0390 1185 Gene3D nmb1532 protein domain like 641 867 - -
Glsi05g0390 1185 FunFam Zinc finger protein BRUTUS 640 867 - -
Glsi05g0390 1185 Gene3D nmb1532 protein domain like 300 444 - -
Glsi05g0390 1185 Gene3D nmb1532 protein domain like 36 188 - -
Glsi05g0390 1185 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 688 1092 - -
Glsi05g0390 1185 MobiDBLite consensus disorder prediction 543 573 - -
Glsi05g0390 1185 CDD Hr-like 649 802 - -
Glsi05g0390 1185 SUPERFAMILY Zinc hairpin stack 1051 1091 IPR037275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0390 Glsi-ChrGlsi05 52783575 52791787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0390 1 1090 C2H2 Transcription Factor Family AT3G18290 59.821 0.0 1276