Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0380 ATGGGACTTGGGCTAGGTACCGGCGTGGAATTTATCAATGAAGTTGCAAGTATCAGTAGGACATCTCATGTTAACATTGTCAATCTTTTGGGGTTTTGTTTTCAACGTTACAAAAAAGCACTGGTTTATGAGTTTATGTCTAATGGATCTCTTGAGAAGTTTATATATGAGGAGGATGCCAACATAGTTGATCGCCAATTGAATTGTAAAACTTTATGTGATATTGCTATTGGCGTTGCTAGAGGACTTGAGTACTTGCACAGAGGTTGCAATACTAGAATCTTGCATTTTGACATAAAACCTCACAACATACTACTTGATGAGGATTTCTGTCCAAAGATATCAGATTTTGGACTTGCAAAAGTATGCACAAGAAAAGAGAGCATTGTCTCCTTACTGGGTGCAAGGGGAACTGCCGGATACATTGCTCCTGAGTTGTTTTCTAGGAATTTTGGCGGAGTGTCTCACAAGTCAGATGTTTACAGTTACGGAATGATGGTTTTAGAAATGGTTGGGGGAAGAAGGAACATCAATATTGAAGTTAATCGTTCCAGTGAACTATATTTTCCACATTGGATTTATAAGCGCCTTGAATTAAATCAAGAACTTGAACTAAAGTGTATTAAAAATGAAATTGATAAAGAAATGGTGAAAAAGATGATAGTGGTGAGCTTATGGTGCATACAAACAGATCCTGCAACTCGACCAGCAATGAATAAGGTCGTGGAGATGCTAGAGGGAAGCCTAGAATCTTTGCAAGTACCTCCGAAACCTTATCTATCTTCTCCTTCAAGATCTCCAACTCATTACTCAACTCAAACATGTGAGAATTTGTAG 837 0.3811 MGLGLGTGVEFINEVASISRTSHVNIVNLLGFCFQRYKKALVYEFMSNGSLEKFIYEEDANIVDRQLNCKTLCDIAIGVARGLEYLHRGCNTRILHFDIKPHNILLDEDFCPKISDFGLAKVCTRKESIVSLLGARGTAGYIAPELFSRNFGGVSHKSDVYSYGMMVLEMVGGRRNINIEVNRSSELYFPHWIYKRLELNQELELKCIKNEIDKEMVKKMIVVSLWCIQTDPATRPAMNKVVEMLEGSLESLQVPPKPYLSSPSRSPTHYSTQTCENL 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0380 278 SMART serkin_6 5 245 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0380 278 Gene3D Transferase(Phosphotransferase) domain 1 47 260 - -
Glsi05g0380 278 SUPERFAMILY Protein kinase-like (PK-like) 10 246 IPR011009 -
Glsi05g0380 278 PIRSF ILK 7 254 - -
Glsi05g0380 278 ProSitePatterns Serine/Threonine protein kinases active-site signature. 94 106 IPR008271 GO:0004672|GO:0006468
Glsi05g0380 278 Pfam Protein tyrosine and serine/threonine kinase 10 245 IPR001245 GO:0004672|GO:0006468
Glsi05g0380 278 PANTHER RUST RESISTANCE KINASE LR10-RELATED 8 264 IPR045874 GO:0004672
Glsi05g0380 278 Gene3D Phosphorylase Kinase; domain 1 6 46 - -
Glsi05g0380 278 ProSiteProfiles Protein kinase domain profile. 1 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0380 278 MobiDBLite consensus disorder prediction 255 278 - -
Glsi05g0380 278 FunFam PR5-like receptor kinase 46 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0380 Glsi-ChrGlsi05 52469439 52470993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0380 6 261 Receptor kinase-like Gene Family AT4G18250 59.924 8.61e-108 325
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Glsi05g0380 PK_Tyr_Ser-Thr 7.3e-37 CL0016