Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0345 ATGTCTTTGGCATCTCCGATTAAATCTTGTATAGCGAAAATGCATAATAAGGACGCTTTTTCTCCCTCCTCCAATGGCGTAGTTGGAGACATTACCGGCCAAATGCAGTCAAATGGCACCGTTTTTGGTTCCCCCTACTCTACTTTGTTCACCGGCAACCCATCCCTCTCTGCCACCAGCAATTGCGGCCTCTCGCTTACCCCATATGAAGGAAACTCCCACTTGAAATACAACGATTCGGCCATTCAGAGCAACCTGTACGACTCCAGCGTCGTACAGAAACACCAGGATATGGTGAACCACCGCAGTATGTGCCTAAGTCGCCTCGTCGAAACTTCGAAGGAGGTCGAAGCTCTGAGGCATGAGAACACCCAACTTCGGGCTGTGAATAGGGAGCTGAACAAGCAACTGAGCCTTCTCATTCAGGTCTCTGTCCAGAATCCATTCGATTGTAATTCCCCTGGCCATACGGAAGCGTTTGATGTTGTGAACGGGTTTCGTGGGTTCCATATTGGGGACAACAATTTCAGGGATGGGAATAAGGAGAATTGTGGTGACTGGAATAATGATCAGGAAGTCTCGGACGAGAGTCCAACTAGCGTAATTGAGGACAGTACTGTTGAAGTGGAGAGGTTCTCGCTGCCTAAGAGCATATCTGTGAGATCAAATGGATACTTGAAGGTGGCACAGCCTCAGACTGTAGCCGGTGCCAGCAGTGGCAAACGCCCCAAGGGCGCTACTCGACAGCGCACGGCTTCGACTCCACCTGATGTCGTTCAAAAGGTATATGTGCGAGGAGGGAAGAAGGAGGAAGAGCCCCTTGAGATGGTGGTGTATAACCAAGGCATGTTCAAGACAGAACTGTGCAATAAATGGCAGGAGACTGGCACATGCCCTTATAAAGATCAGTGCCAATTTGCTCACGGTATTGATGAACTTCGCCCGGTCATCCGCCACCCACGCTACAAAACTGAGGTCTGCAGGATGGTCCTTGCTGGAGTTCCATGCCCATATGGCCATAGATGCCATTTCCGCCATGCACTCACTGAACAAGAGAAAGCCATGGCAGTGGCACAGCCAAAGCCCAGGGCACTGAATCTGGACAGACAAAATAACATCAGTACTTCAACTGCTTCATGCTGA 1143 0.5004 MSLASPIKSCIAKMHNKDAFSPSSNGVVGDITGQMQSNGTVFGSPYSTLFTGNPSLSATSNCGLSLTPYEGNSHLKYNDSAIQSNLYDSSVVQKHQDMVNHRSMCLSRLVETSKEVEALRHENTQLRAVNRELNKQLSLLIQVSVQNPFDCNSPGHTEAFDVVNGFRGFHIGDNNFRDGNKENCGDWNNDQEVSDESPTSVIEDSTVEVERFSLPKSISVRSNGYLKVAQPQTVAGASSGKRPKGATRQRTASTPPDVVQKVYVRGGKKEEEPLEMVVYNQGMFKTELCNKWQETGTCPYKDQCQFAHGIDELRPVIRHPRYKTEVCRMVLAGVPCPYGHRCHFRHALTEQEKAMAVAQPKPRALNLDRQNNISTSTASC 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0345 380 FunFam Zinc finger protein 36, C3H1 type-like 1 317 353 - -
Glsi05g0345 380 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 284 309 IPR000571 GO:0046872
Glsi05g0345 380 SMART c3hfinal6 321 348 IPR000571 GO:0046872
Glsi05g0345 380 SMART c3hfinal6 283 310 IPR000571 GO:0046872
Glsi05g0345 380 SUPERFAMILY CCCH zinc finger 317 351 IPR036855 GO:0046872
Glsi05g0345 380 FunFam zinc finger CCCH domain-containing protein 15-like 277 316 - -
Glsi05g0345 380 Gene3D - 317 353 - -
Glsi05g0345 380 Gene3D - 278 316 - -
Glsi05g0345 380 Coils Coil 109 136 - -
Glsi05g0345 380 ProSiteProfiles Zinc finger C3H1-type profile. 321 349 IPR000571 GO:0046872
Glsi05g0345 380 PANTHER CCCH ZINC FINGER/TIS11-RELATED 95 357 IPR045877 GO:0003729
Glsi05g0345 380 MobiDBLite consensus disorder prediction 232 254 - -
Glsi05g0345 380 ProSiteProfiles Zinc finger C3H1-type profile. 283 311 IPR000571 GO:0046872
Glsi05g0345 380 SUPERFAMILY CCCH zinc finger 280 315 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0345 Glsi-ChrGlsi05 51737516 51739614 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0345 86 364 C3H Transcription Factor Family AT1G68200 54.861 1.74e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Glsi05g0345 zf-CCCH 5.2e-10 CL0537
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0345 05 51737516 51739614 Glsi05g0345 05 51737516 51739614 ECH