Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0342 ATGGGGTTGCAGAACCAGTTAAACGACGTCTCTTCAGATTCGATTCCGCTGCTTCTCTTGGCGCTCATCGCCAACTGCGTCAACCACGTCCGCTCCTTGCTTCTGGGTTTCCTCCAATCTCTGGGTCTATCCCGATTCGACCCGAACCACGTCGTCGATGAGGGGCTCTGGGGCGCCGTTGGATCGGGCCTTGCCAGCCTCATCGTACTCTCGGAGCAGCTAAATCTCAACCACCGCGTCTCCTACAGATACACCGTTGTCGACGGCGGCGATGTTGGTTCCGCCGGCGTGATCGGGGCCCCTAAGTGTGTGGTCTGCCAGAGCACGTTTAAGGATGGGGACCAGGTCCGGAGGCTACCCTGCCGCCACGTCTTCCATAGACACTGCTTCGACGGTTGGCTGGACCACCTCAACTTTAACTGCCCCCTCTGTCGGTCGCCGCTTGTTTCCGAGGATCGCGTGGCCTTCACGGAGCGACGCGTCGGTGCTGAACTCGTTTCCTTTTTCTCTGTACGGTGA 519 0.5915 MGLQNQLNDVSSDSIPLLLLALIANCVNHVRSLLLGFLQSLGLSRFDPNHVVDEGLWGAVGSGLASLIVLSEQLNLNHRVSYRYTVVDGGDVGSAGVIGAPKCVVCQSTFKDGDQVRRLPCRHVFHRHCFDGWLDHLNFNCPLCRSPLVSEDRVAFTERRVGAELVSFFSVR 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0342 172 SUPERFAMILY RING/U-box 102 150 - -
Glsi05g0342 172 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
Glsi05g0342 172 PANTHER RING ZINC FINGER PROTEIN-RELATED 83 153 - -
Glsi05g0342 172 SMART ring_2 103 144 IPR001841 -
Glsi05g0342 172 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 155 IPR013083 -
Glsi05g0342 172 CDD RING-H2_RHA2B 103 147 - -
Glsi05g0342 172 Pfam Ring finger domain 102 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0342 Glsi-ChrGlsi05 51452618 51453136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0342 1 171 C3H Transcription Factor Family AT1G15100 50.877 2.13e-49 155