Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0304 ATGCTGTTGCGAGCTCGCACTGCAAACCTTTGGGGCTCTGTCCTTCCTGGTTTCAACGCCTATCAGGCTCACCATTCCTCCATTCACCTCAACCTTTCTTCTTTAACCCAACCTCAGGTTTCTAGCGCCTTGGACGACGATTACGAGGATTTTTTGCCATGGTTGGAGCGAAAAGCTGGTTCTAGGATTTCATCAGCACTGTCAATTGGAAAATCTTCATACGGCAGGTCTCTGTTTGCCTCTAGGATAATACACACTAGAGAATGCATTTTGAAGGTTCCTTACACTGTGCAAATAACTGTAGATAATCTTCTTCCAGAAATCAGGTCTTTGATTAGTGATGAAGTTGGAAATATTGCAAAACTTGCTATTGTTATTCTAGTTGAGCAGAAACTGGGTCAGGACTCTGAGTGGGATCCATATATCAGCCATCTTCCTCTGCAAGGGGAGCTGCATAATACGATATTTTGGAGTAAAAATGAGTTGGACATGATTCGTCAAAGCACAGTATATCAGGAAACCATAAACCAAAAGTCTCAAATTGAAAGGGACTTTTTGGCAGTCAGACCAGTGTTAAAATGCTTCCCTCGAAGTCTTGGGGACTTTACTTTCAGGGATTTCATGCATGCATGTACAGTAGTCCTCCTATCTCACATCTTCAATGTCAAATTACCAGTTGGTTCTCGAGCATGGGGAAGCATGAAGGGTTTATCTCTGATTCCATTTGCAGATTTCTTAAATCATGATGGGGTTTCAGAAGCAATTGTAATGAGTGATGATGACAAACAATACTCAGAAGTCTGTGCTGATCGTGACTATGCTCCTGGTGAACAGATACTGATAAGATATGGAAAATTTTGTAATGCTACCTTGATGCTGGACTTTGGTTTTACACTTCCATACAACATTTATGATAAGGTTCAGATCCAGCTTGATATACCGAAGGATGATCCTCTGCATAATCTGAAGATGGAACTCTTGCAGCAATATTTTGTGCCTACAACCAAAGATCCGAAATGCTTGAAGTATTCTGTGAATTCTTTCACAATCAAGGAAGTGAGGTCTGCTAGAGGAAACGGGAAGGGTCTTCCACAGTCACTTCGTGCATTCGCTCGTGTTCTTTCTTGCACCTGTCCTCAGGTATCCACTTATGGAATTATTATTGATCAAATATCAGAACTCAATAATTGGGCCTTGGAGGCTGCACGAACTGATGGTAGGCTGGCTAGGTGTCCTTTACGCAATATCAACAAAGAGTTACAAGCACATCTAATGTTGTCATCATTATTTACCCAATTAATTGACGAGCGCAATGCAGCTATACAGTCATTGAAGTTTTCCAATTCACCCTCCGTTTCTGGAAAGCTTTCTGTGAGAAGTATAATGGCTCGGGATCTCTTGGAAGGTGAGATGCGCGTTCTCAAATCTGCTTCTGCCTGGCTGGAGAATTACTGTTCTTCCTTGACTGTCTATTAG 1476 0.4187 MLLRARTANLWGSVLPGFNAYQAHHSSIHLNLSSLTQPQVSSALDDDYEDFLPWLERKAGSRISSALSIGKSSYGRSLFASRIIHTRECILKVPYTVQITVDNLLPEIRSLISDEVGNIAKLAIVILVEQKLGQDSEWDPYISHLPLQGELHNTIFWSKNELDMIRQSTVYQETINQKSQIERDFLAVRPVLKCFPRSLGDFTFRDFMHACTVVLLSHIFNVKLPVGSRAWGSMKGLSLIPFADFLNHDGVSEAIVMSDDDKQYSEVCADRDYAPGEQILIRYGKFCNATLMLDFGFTLPYNIYDKVQIQLDIPKDDPLHNLKMELLQQYFVPTTKDPKCLKYSVNSFTIKEVRSARGNGKGLPQSLRAFARVLSCTCPQVSTYGIIIDQISELNNWALEAARTDGRLARCPLRNINKELQAHLMLSSLFTQLIDERNAAIQSLKFSNSPSVSGKLSVRSIMARDLLEGEMRVLKSASAWLENYCSSLTVY 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0304 491 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 44 297 - -
Glsi05g0304 491 Gene3D - 300 486 IPR036464 -
Glsi05g0304 491 Gene3D set domain protein methyltransferase, domain 1 15 297 - -
Glsi05g0304 491 Pfam Rubisco LSMT substrate-binding 314 474 IPR015353 -
Glsi05g0304 491 Pfam SET domain 75 284 IPR001214 GO:0005515
Glsi05g0304 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 46 415 - -
Glsi05g0304 491 SUPERFAMILY SET domain 45 302 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0304 Glsi-ChrGlsi05 50350609 50363608 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g0304 SET 1.3e-08 No_clan