LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi05g0285	ATGAGGAAACCTTGCTGTGATAAGCAAGACTTGAACAAAGGAGCTTGGTCCAAACAAGAAGATCAAAAACTCATAGATTACATCAACAAACATGGCGAAGGTTGCTGGCGTACTCTCCCTCAAGCTGCAGGCTTACTTCGTTGCGGTAAAAGTTGCAGGCTGAGATGGATAAACTATCTACGCCCAGACATTAAAAGAGGCAACATTGCTGAAGATGAAGAAGATCTCATCATCAGGCTTCATGCACTGCTAGGGAACCGCTGGTCATTAATAGCTGGAAGATTACCTGGACGGACAGACAATGAAGTGAAGAACTATTGGAATTGTCATCTAAGAAGAAAGCTCATTAACATGGGAATTGATCCAGATAATCATAGATTGAGACATAAATTTCCTAGACCTCAAAATCCAACCATGTCTCGTAGCTCAAGATCATCTGGCTTGAAAGACAGTGCCAAAAATACTAAGCCAACAATGAAGTCCGATCGTGATGGTGGCGACACTAACAATAATTATGAACAAGTTTCAGATGCTACAAGTGGCTTGGAAGATGAATCCTTTGGCTTGCCTGATCTAAACCTTGATCTTACTGTGAGCATTCCTTCATCCATATCCAGTACTGCTGCTGATGAAGACAAACAAAAGTCAATTCATGAATCTAAATCTTCAAGGGAAATGCTTTTTGCCTCCTCTCCGACACTTCTTCTGTTTCAGTAA	717	0.4128	MRKPCCDKQDLNKGAWSKQEDQKLIDYINKHGEGCWRTLPQAAGLLRCGKSCRLRWINYLRPDIKRGNIAEDEEDLIIRLHALLGNRWSLIAGRLPGRTDNEVKNYWNCHLRRKLINMGIDPDNHRLRHKFPRPQNPTMSRSSRSSGLKDSAKNTKPTMKSDRDGGDTNNNYEQVSDATSGLEDESFGLPDLNLDLTVSIPSSISSTAADEDKQKSIHESKSSREMLFASSPTLLLFQ	238

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi05g0285	238	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	8	60	IPR017930	-
	Glsi05g0285	238	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	202	-	-
	Glsi05g0285	238	CDD	SANT	71	111	IPR001005	-
	Glsi05g0285	238	MobiDBLite	consensus disorder prediction	203	238	-	-
	Glsi05g0285	238	CDD	SANT	15	60	IPR001005	-
	Glsi05g0285	238	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Glsi05g0285	238	SUPERFAMILY	Homeodomain-like	10	107	IPR009057	-
	Glsi05g0285	238	FunFam	MYB transcription factor	67	128	-	-
	Glsi05g0285	238	ProSiteProfiles	Myb-like domain profile.	8	60	IPR001005	-
	Glsi05g0285	238	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	61	115	IPR017930	-
	Glsi05g0285	238	MobiDBLite	consensus disorder prediction	122	186	-	-
	Glsi05g0285	238	FunFam	MYB-related transcription factor	12	65	-	-
	Glsi05g0285	238	Gene3D	-	69	163	-	-
	Glsi05g0285	238	MobiDBLite	consensus disorder prediction	135	154	-	-
	Glsi05g0285	238	Gene3D	-	13	65	-	-
	Glsi05g0285	238	SMART	sant	12	62	IPR001005	-
	Glsi05g0285	238	SMART	sant	65	113	IPR001005	-
	Glsi05g0285	238	Pfam	Myb-like DNA-binding domain	13	60	IPR001005	-
	Glsi05g0285	238	Pfam	Myb-like DNA-binding domain	70	108	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi05g0285	Glsi-ChrGlsi05	49823491	49826290	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi05g0285	2	204	MYB Transcription Factor Family	AT4G38620	53.271	2.45e-77	233

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Glsi05g0285		Myb_DNA-binding	1.5e-14	CL0123