Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0283 ATGGCCGGCGGAGTCACCGGCGCCGGAGACCGCGTACCGGAACTCCTAGGCCTCGTTCGTGACATCGCCGGAATGTGCTGTGGTGCAGCTGGTGGGTCTTCCTCTGGCCCCGCCATTACTGCTGATGCTATTTTCAAGAAGGACTGCATCGATCTGGTTCGTCGGATCTCACTTCTCTCCCATTTGTTCGAGGAGATTAGGGACTTGAAGGCTGTTGATTCTGCAAAGTTGGATGCTTCCACTTCTTCCACCAGCTCTGCCACTTCCTGGTCCTCTGATCTGGTGCTTGCTCTCCACTCTGCTAAGCGCCTTCTTTCCGTCGCTAGGAACTTCCGTTCCAATTGCACTTCTGATGGAGCTGCCAAGACAATTGTCTTCCAATTTCAGTGTGTGACTTGGAAATTGGGAAAACTAGTGAGCAACTTACCATATGACCATTTGGACATCTCAGAGGAAGTTAGAGAACAGGTGGACTTGGTGAGAACACAATTGAGTCGAGCCACAGAAAGATACGGATCCATTATTTCAAATATGTCATCTTTTGACTTATCCCAGGCACGGGCTCAAAACATTAGTCAGGTTATTGGCAAATCTATGAATGGATTGCATAAACAAAACAGCTGTCCTGAATATTTATCAAAATTAGACAGCATCCCCTGCAGCACATATAAGGCAAGTCTTCACTTGGAAAGAGCAAGGAGCATCCCTGCCTCTTCTGAGGTTTCCATATTAAATGTCAATCATTCTGAAAGTGAAGAAGATTCTGAGAGGAAGAGCCTGACTGAAGTTAAAAAACCTGAAGCAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCCTTGGAACTAATGAGAGATCCTGTTATTGTGGCCACAGGTCAGACATATGAGCGATCTTACATACAGAGATGGATAGATGGTGGAAATGCAACTTGTCCAAAAACTCAGCAGAAGCTACAAAATTCAACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGATAATAACATTGAGCAGCCAACAGGACTAACTCATGGCAAGCTAAAAAATAGTGATGGATCATTTAGAGATGTTACGAGTGACATAGCAGCCATTGAAACTTTGGTCCAGAATCTGTCCAGCCAGTCCATCGAGGAGCGGAGGGCAGCTGTTACTGAAATCCGATCACTTTCCAAACGGAGCACAGACAACAGGATACTAATTGCTGAAGCAGGAGCTATTCCAGTTCTGGTCAACCTTTTAACATCAGAAGATGCATTGACACAAGAGAATGCAGTTACTTCAATTCTCAACCTCTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCAGGTGCCGTACCATCCATTGTCCAAGTTCTCAGAGCTGGAAGCATGGAAGCGAGAGAAAATGCAGCAGCAACCCTCTTTAGTTTATCACTTGCAGATGAGAACAAAATAATAATTGGCTCCTCAGGAGCTATCCCTGCTTTGGTAGAATTGCTCCAAAATGGCAGTCTTAGAGGGAAGAAGGATGCGGCAACAGCATTATTCAATTTATGCATTTATCAAGGGAACAAGGGTAGGGCCATAAGGGCAGGGATCATCACTGCGTTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATTGTAAAGGCTAGCTCTATTCCTGTTTTGATTGATCTTTTGAGGACAGGTCTGCCTCGAAACAAAGAGAACGCAGCTGCCATTTTACTTGCCTTGTGTAAGAGAGATACTGACAATCTTGCCTGTATAAGTAGACTTGGCGCTGTCATACCTTTGACTGAAATTGCTCAGAGTGGCACAGAGAGGGCTAAAAGGAAGGCTACTTCATTATTGGAGCATCTTCGAAAGTTACAGCAGCTTTGA 1953 0.4429 MAGGVTGAGDRVPELLGLVRDIAGMCCGAAGGSSSGPAITADAIFKKDCIDLVRRISLLSHLFEEIRDLKAVDSAKLDASTSSTSSATSWSSDLVLALHSAKRLLSVARNFRSNCTSDGAAKTIVFQFQCVTWKLGKLVSNLPYDHLDISEEVREQVDLVRTQLSRATERYGSIISNMSSFDLSQARAQNISQVIGKSMNGLHKQNSCPEYLSKLDSIPCSTYKASLHLERARSIPASSEVSILNVNHSESEEDSERKSLTEVKKPEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDGGNATCPKTQQKLQNSTLTPNYVLRSLITQWCIDNNIEQPTGLTHGKLKNSDGSFRDVTSDIAAIETLVQNLSSQSIEERRAAVTEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDALTQENAVTSILNLSIYENNKGLIMLAGAVPSIVQVLRAGSMEARENAAATLFSLSLADENKIIIGSSGAIPALVELLQNGSLRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASSIPVLIDLLRTGLPRNKENAAAILLALCKRDTDNLACISRLGAVIPLTEIAQSGTERAKRKATSLLEHLRKLQQL 650
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0283 650 FunFam RING-type E3 ubiquitin transferase 268 344 - -
Glsi05g0283 650 Gene3D - 551 649 IPR011989 -
Glsi05g0283 650 SMART arm_5 441 481 IPR000225 GO:0005515
Glsi05g0283 650 SMART arm_5 482 522 IPR000225 GO:0005515
Glsi05g0283 650 SMART arm_5 523 563 IPR000225 GO:0005515
Glsi05g0283 650 SMART arm_5 400 440 IPR000225 GO:0005515
Glsi05g0283 650 SMART arm_5 564 604 IPR000225 GO:0005515
Glsi05g0283 650 CDD RING-Ubox_PUB 272 324 IPR045210 -
Glsi05g0283 650 SMART Ubox_2 274 337 IPR003613 GO:0004842|GO:0016567
Glsi05g0283 650 SUPERFAMILY RING/U-box 270 345 - -
Glsi05g0283 650 FunFam RING-type E3 ubiquitin transferase 550 649 - -
Glsi05g0283 650 ProSiteProfiles U-box domain profile. 270 344 IPR003613 GO:0004842|GO:0016567
Glsi05g0283 650 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 345 IPR013083 -
Glsi05g0283 650 SUPERFAMILY ARM repeat 370 644 IPR016024 -
Glsi05g0283 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 411 453 IPR000225 GO:0005515
Glsi05g0283 650 PANTHER U BOX DOMAIN-CONTAINING 46 646 - -
Glsi05g0283 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 493 535 IPR000225 GO:0005515
Glsi05g0283 650 FunFam RING-type E3 ubiquitin transferase 354 447 - -
Glsi05g0283 650 Pfam U-box domain 271 341 IPR003613 GO:0004842|GO:0016567
Glsi05g0283 650 Coils Coil 630 650 - -
Glsi05g0283 650 Gene3D - 446 550 IPR011989 -
Glsi05g0283 650 FunFam RING-type E3 ubiquitin transferase 448 548 - -
Glsi05g0283 650 Gene3D - 360 445 IPR011989 -
Glsi05g0283 650 Coils Coil 150 170 - -
Glsi05g0283 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 534 576 IPR000225 GO:0005515
Glsi05g0283 650 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 452 494 IPR000225 GO:0005515
Glsi05g0283 650 Pfam Armadillo/beta-catenin-like repeat 483 521 IPR000225 GO:0005515
Glsi05g0283 650 Pfam Armadillo/beta-catenin-like repeat 401 439 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0283 Glsi-ChrGlsi05 49720627 49723781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0283 1 649 U-box Gene Family AT1G23030 60.514 0.0 725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0283 05 49720627 49723781 Glsi05g0283 05 49720627 49723781 ECH