Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0268 ATGTCTAGCAATGAGATCACAAAGATGGAAGAAGGTGAAAGTGGCTCCCCAAGAGGAACTGGATTCTGTGGTAATCCTTCGATAGTTCATATCATACAGAAGGTAATTGCAGAGGCAATTGGGACATACTTCTTGATATTTGCAGGGTGTTGTGCTGTGGTTTTGAATAAACTAAATGGGAGTGTAACGTTTTCTGGAATTTGTGTAGTATGGGGTTTAACTGCAATGATAATGATTTATTCTGTTGGCCACATCTCGGGCGGCCATTTTAATCCAGCAGTCACCGTCACCTTCGCCATCTTTCGACACTTCCCTCTGAGACAGGTGCCTCTATATCTTATTGCACAATTGGTAGGATCTATCCTTGCTAGTGGGACATTGTACCTTTTGTTTGATGTGGATGAAAAAACCTTTTTTGGAACAGTGCCAACAGGATCTAATATTCAGTCTTTTGTCATGGAGATTCTCACTTCATTCTTATTGATGTTTGTTGCTTCTGCGGTTGCTACAGACAATAGAGCTATTGGAGAATTGGCAGGAATTGCTATTGGGATGACAATTTTAGTAGACGTCTTCATTGCTGGGCCTGTGTCAGGAGCATCTTTGAACCCTGCAAGAACCCTTGGACCTGCTATTGTAATGCACATTTATAATGGAATATGGGTTTATATAGCGGGCCCATTTCTTGGGACCATACTTGGTGCCTTTGCCTATAGCCTCATTAGATTTACTAATAAACCTCCAAGGGAAATCAGCAAAAGCTCCACTTTCCTCAAAAGCATGTCAAGAGCAAGCAATCGCTCGACAATGGCCTAA 816 0.4191 MSSNEITKMEEGESGSPRGTGFCGNPSIVHIIQKVIAEAIGTYFLIFAGCCAVVLNKLNGSVTFSGICVVWGLTAMIMIYSVGHISGGHFNPAVTVTFAIFRHFPLRQVPLYLIAQLVGSILASGTLYLLFDVDEKTFFGTVPTGSNIQSFVMEILTSFLLMFVASAVATDNRAIGELAGIAIGMTILVDVFIAGPVSGASLNPARTLGPAIVMHIYNGIWVYIAGPFLGTILGAFAYSLIRFTNKPPREISKSSTFLKSMSRASNRSTMA 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0268 271 CDD MIP 33 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 MobiDBLite consensus disorder prediction 1 20 - -
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 108 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 71 95 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 184 206 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 221 241 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 153 171 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 Pfam Major intrinsic protein 29 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 PANTHER AQUAPORIN NIP2-1 13 259 IPR034294 -
Glsi05g0268 271 ProSitePatterns MIP family signature. 89 97 IPR022357 -
Glsi05g0268 271 NCBIfam MIP family channel protein 37 238 IPR000425 GO:0015267|GO:0016020|GO:0055085
Glsi05g0268 271 Gene3D Glycerol uptake facilitator protein. 6 253 IPR023271 -
Glsi05g0268 271 SUPERFAMILY Aquaporin-like 29 250 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0268 Glsi-ChrGlsi05 49094789 49118517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0268 1 268 Major Intrinsic Protein MIP AT5G37820 61.029 3.88e-118 339