Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0260 ATGGCGTTAGCTCTGAAGCTCCTACTTTTCTTCTCCTACGTCCTTTATCTCAACATACCAACTTTTTCATCCCCCACTTCAACCTTCCCTGCGGAAGCCCTTCCCACCAAGTCTGGTTACCTCCCAGTGAAACCCAAATCCAATTCCTCCATCTTCTACATCTTCTATGAAGCACAGAAGCCCATCTCTCCTCTCTCAGAAACCCCACTTCTCTTCTGGCTCCAAGGTGGCCCTGGCTGCTCGTCAATGACCGGAAACTTCTTAGAACTCGGCCCCTGGCGTGTTATTTCTCGCACCAAAAATTCTGAATCCGTTTCGCTTGAAAGGAATCCTGGTTCTTGGAATCGAATCTTTGGGCTTGTTTTTCTTGATAATCCTATTGGAACAGGGTTCAGCATTGCTTCCAGCCCTGAAGAGATCCCAAGAGACCAGAGATCTATCGCAAAACACCTTTTTTCTGCGATCACAGCATTCATTGATCTCGACCCAGAATTCAAGTCTCGGCCAGTTTACATCACGGGTGAGAGCTATGCTGGGAAGTATATTCCAGCAATTGGGTGTCATATTTTGAAGAAGAATAAGCAGCTATCTATGTCCAAAAGGGTGAATTTGGCTGGTGTTGCTATTGGGGATGGCTTGACAGATCCGGTGACTCAGGTGAAAACTCATGCTGTGAGTGCTTATCATTGTGGTTTGATTAATCAGCGGCAGAAGGAAGAGGTAGAGAAGGTTCAACTGGAAGCAGTGAGCTTGGCAAGAAGTGGAAATTGGAGTGAAGCTACAAATGCAAGGCAGAGAGTCATGAAAATATTGGAAAATATGACAGGATTGGCCACTTTGTTTGATTTTACAAAGAAAGTTCCTTACCAAACTGATTTGGTCACGAAGTTTCTAAACAAGAATGAGGTGAAAAAGGCCTTGGGAGTGAAGGAATGGGTGGTTCATAAGCATTGCAGTGATGATGTGAAGAAGACGCTGCAGGAAGATGGGATGAAGAGCGCAAAACGCATGGCGGAGTACTTGGTGAAAAATAGCAAGGTGTTGATGTTTCAGGGCAATTTTGATTTAAGGGCTGGTGTGGTTCAAGTTGAGGCCTGGGTGAAGACATTGAAATGGGAGGGAATTGAAGAGTTCTTGAGAGCAGAGAGGAAGATCTGGACAGTAAATGGGGAACTTGCTGGGTATGTGCAAAAATGGAAGAGTCTTACCAATGTTGTGGTTTTAGGGGCTGGACATCTTTTGCCAGCTGATCGGGGAATCAATTCTCAAGCAATGATAGAAGACTGGATTTTGGAAAAGGACTTATTTAGCAATGTGCAGGGGCTAGAGTTGTCATCAAAACCTTGGGATTCAGTGTGA 1359 0.4496 MALALKLLLFFSYVLYLNIPTFSSPTSTFPAEALPTKSGYLPVKPKSNSSIFYIFYEAQKPISPLSETPLLFWLQGGPGCSSMTGNFLELGPWRVISRTKNSESVSLERNPGSWNRIFGLVFLDNPIGTGFSIASSPEEIPRDQRSIAKHLFSAITAFIDLDPEFKSRPVYITGESYAGKYIPAIGCHILKKNKQLSMSKRVNLAGVAIGDGLTDPVTQVKTHAVSAYHCGLINQRQKEEVEKVQLEAVSLARSGNWSEATNARQRVMKILENMTGLATLFDFTKKVPYQTDLVTKFLNKNEVKKALGVKEWVVHKHCSDDVKKTLQEDGMKSAKRMAEYLVKNSKVLMFQGNFDLRAGVVQVEAWVKTLKWEGIEEFLRAERKIWTVNGELAGYVQKWKSLTNVVVLGAGHLLPADRGINSQAMIEDWILEKDLFSNVQGLELSSKPWDSV 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0260 452 ProSitePatterns Serine carboxypeptidases, serine active site. 172 179 IPR018202 GO:0004185
Glsi05g0260 452 FunFam Carboxypeptidase 20 437 - -
Glsi05g0260 452 Pfam Serine carboxypeptidase 33 430 IPR001563 GO:0004185|GO:0006508
Glsi05g0260 452 Coils Coil 234 254 - -
Glsi05g0260 452 Gene3D alpha/beta hydrolase 18 441 IPR029058 -
Glsi05g0260 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 158 183 IPR001563 GO:0004185|GO:0006508
Glsi05g0260 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 123 133 IPR001563 GO:0004185|GO:0006508
Glsi05g0260 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 110 122 IPR001563 GO:0004185|GO:0006508
Glsi05g0260 452 PRINTS Carboxypeptidase C serine protease (S10) family signature 402 415 IPR001563 GO:0004185|GO:0006508
Glsi05g0260 452 SUPERFAMILY alpha/beta-Hydrolases 35 433 IPR029058 -
Glsi05g0260 452 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 37 417 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0260 Glsi-ChrGlsi05 48871631 48872989 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0260 299 430 Calmodulin-binding Proteins AT2G22960 22.059 1.38e-06 47.0