Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0248 ATGGACGATGAAGTTGTTCAGAGAGTTTTCCATGAAGGAGGCCGCGACTACTTCCAACAGCAGCCTTCAACTTCCTCATCTTCCTCCTCCATCCTTCAATCTCTCCCTCTTCATGTGTCTTTTGATCATGGCTATTATTTGTTGGTAAAATCTATCCAAGAACTCCGAGAGAAAAAAGAGGGTCTTGTTACAGTTGGCATTGGTGGTCCTAGTGGTTCTGGTAAAACAAGCTTAGCAGAAAAGGTGGCATCTGTTATTGGTTGTACTGTTATATCAATGGAGAATTATCGCGATGGAGTTGATGAAGGGAATGGTTTGGATTCTATAGATTTTGATACCCTGGTCAATAATCTTGAGGATTTGACAAAAGGTGATGATACACTAATTCCAGTGTTTGACTATCAACAAAAGAGACGTGTTGGATATAAAGCAATAAAGAGTGCTTCATCAGGGGTGGTAATAGTTGATGGTACATATGCTCTGCATGCAAGATTGCGTTCTTTACTAGATATTCGAGTTGCTGTGGTTGGTGGTGTTCATTTTAGCTTGCTTTCTAAAGTTCGCTATGATATTGGAGATTCTTGTTCACTGGATTACCTTATTGACAGCATTTTCCCATTATTTCGGAAGCACATTGAGCCAGATCTTCATCACGCGCAGATAAGAATTAATAACAGCTTTGTGTCATCATTTAGAGAAGCAATCTACAAGGTGAAATGCAGAAGTGAGGCTCCAGATGGACATTTGGGTTCTGCCTTTCAAGGAAATGAAGCCCAAACTGACAATTTTATTGAGATGTACCTTAGACCTCCCTCGGCTAGTGAAGAAGCAAGGATAAATGATTGGATCAAAGTGCGGCAGTCCGGAATTAGATATTATCTATCACTTGGTGACCAGAGGATTGTTGATAAAAATTTCATTATCAGGCCTAAAGCTGAGTTTGAGGTTGGGCGAATGACATTGGGGGGATTGCTGGCTCTAGGGTACACTGTTGTAGTTAGTTATAAACGTGCATCCATGACAGTCAGTAATGGCAATGTTTCCATGTCTTTTGAAACCATTGATGCTCTTGATGAGACATATATGGTGCTGAGAGGAACAAATAGGAAAACAGTTGGAACAGAAGCACTAAAGATGGGTGTAAATGGCCCTTGGATCATTAAATCATATCTTGAAATGATTCTTGAGAGAAAAGGCGTACCTCGTCTTAGTACACCACCACTTGTGTCAAATACATCTATGCCTGGTAATCAAGAAAGAGCAATCATTGCACCAAAGCCAATCCGTGTCACTCCTAACCTTGTAACTGGGCTTGAGGATTTATCTCAGCCATGGACTCGATCCCCAAGAAAATCTACAATGGAACCTGTCATAGCAACTTGGCATTTCATATCTTCAGATTCATCTCGATCTAACAGCTCAGTACCAAATCCTTCATCTTTCAGGGATACTATGAGGCTAGCCCCAATGCCTGATTCATATGACTTGGATAGGGGATTGCTTTTGGCTGTTCAAGCAATACAAGCTTTGCTGGAGAATAAAGGTGTCCCAGTCATAGTCGGAATCGGAGGTCCAAGTGGGTCTGGAAAGACTAGTTTGGCTCATAAAATGGCAAATATCATTGGTTGTGAAGTAGTTTCTCTGGAAAGCTATTATAAACGAGTTAAGGATTTTAAATATGATAACTTCAGCTCACTTGATCTGTCTTTACTATCAAAGAATTTTGATGACATAAGGAATGCTCGAAGAACAAAAGTTCCTTTATTTGACTTAGAAACTGGTGCTCGGAGTGGATTCAAGGAACTTGAAGTTTCTGAAGATTGTGGAGTGATTATATTTGAAGGGGTTTATGCTTTGCATCCTGATATCCGAACATCTCTTGACTTGTGGATTGCTGTTGTAGGAGGTGTTCATTCGCATTTGATTTCTCGAGTTCAAAGGGATAAGAGTAGAGTGGGATGTTTTATGTCCCAAAATGAGATCATGATGACAGTGTTTCCTATGTTCCAGCAGCACATTGAACCACATCTTGTTCATGCACATCTTAAAATACGAAATGACTTTGACCCTGTCCTTTCCCCTGAGAGTTCATTGTTTGTATTGAAGAGTAACAAACAAGTAGCTTATCAAGATATTCTTACGATTCTTGATCCAGCTAAATTTTGCAGCTCAGTACAGAAGTTCATTGATATATATTTGAAGCTTCCTGGGACCCCCTCCAATGGGCAGTTGACCGAGAGTGATTGCATACGAGTCAGAATATGTGAAGGCAAATTTGCATTGTTGATACGAGAGCCTATTAGAGAAGGAAACTTCATCATTCAGCCTAAAGTGGATTTTGATATTAGCATTACTACGGTTGCTGGTCTTCTTAATCTAGGGTATCAGGCTGTAGCTTATATTGAAGCATCTGCATTCATCTACCAAGATGGAAAGATTCTAATTGAGGTTGACCATCTACAAGATGTCTCAGGTCCATACATTCAGATTAAGGGTGTTGATAAAGATGCTGTAGCAGCAGCGGGTTTGATCCTTAAATTGGATGGTTCATATACTACTAAGAGTTATCTTCAAATAATTTTGGAAAGACTGCCAGTAGTAGAAAGAACTTTTGGTGGGATTCACTCTCAGCAGTCAGCAAGGCTGCAAGAAATTGTTGAATTTATTCAATCACAGGGAAGTAGCTCAGCATCAGAATCCTCAACAAGTAGGGTGGTGTCTCCAATTGAAGGGGTTATTGAGGAGATGCAGTCAAGGATTAAAAGGCTTGAACGGTGGCTTACTGTAAATACGGTTTTATGGACATTTCTGATGTCTGCCCTGGTGGGTTATTCGCTGTACCAAAGGAAGCGTCAATGA 2859 0.4033 MDDEVVQRVFHEGGRDYFQQQPSTSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCTVISMENYRDGVDEGNGLDSIDFDTLVNNLEDLTKGDDTLIPVFDYQQKRRVGYKAIKSASSGVVIVDGTYALHARLRSLLDIRVAVVGGVHFSLLSKVRYDIGDSCSLDYLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKVKCRSEAPDGHLGSAFQGNEAQTDNFIEMYLRPPSASEEARINDWIKVRQSGIRYYLSLGDQRIVDKNFIIRPKAEFEVGRMTLGGLLALGYTVVVSYKRASMTVSNGNVSMSFETIDALDETYMVLRGTNRKTVGTEALKMGVNGPWIIKSYLEMILERKGVPRLSTPPLVSNTSMPGNQERAIIAPKPIRVTPNLVTGLEDLSQPWTRSPRKSTMEPVIATWHFISSDSSRSNSSVPNPSSFRDTMRLAPMPDSYDLDRGLLLAVQAIQALLENKGVPVIVGIGGPSGSGKTSLAHKMANIIGCEVVSLESYYKRVKDFKYDNFSSLDLSLLSKNFDDIRNARRTKVPLFDLETGARSGFKELEVSEDCGVIIFEGVYALHPDIRTSLDLWIAVVGGVHSHLISRVQRDKSRVGCFMSQNEIMMTVFPMFQQHIEPHLVHAHLKIRNDFDPVLSPESSLFVLKSNKQVAYQDILTILDPAKFCSSVQKFIDIYLKLPGTPSNGQLTESDCIRVRICEGKFALLIREPIREGNFIIQPKVDFDISITTVAGLLNLGYQAVAYIEASAFIYQDGKILIEVDHLQDVSGPYIQIKGVDKDAVAAAGLILKLDGSYTTKSYLQIILERLPVVERTFGGIHSQQSARLQEIVEFIQSQGSSSASESSTSRVVSPIEGVIEEMQSRIKRLERWLTVNTVLWTFLMSALVGYSLYQRKRQ 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0248 952 Gene3D - 516 693 IPR027417 -
Glsi05g0248 952 MobiDBLite consensus disorder prediction 467 481 - -
Glsi05g0248 952 Pfam Phosphoribulokinase / Uridine kinase family 519 684 IPR006083 GO:0005524|GO:0016301
Glsi05g0248 952 Pfam Phosphoribulokinase / Uridine kinase family 65 223 IPR006083 GO:0005524|GO:0016301
Glsi05g0248 952 MobiDBLite consensus disorder prediction 467 486 - -
Glsi05g0248 952 PANTHER URIDINE KINASE 10 270 - -
Glsi05g0248 952 SMART AAA_5 61 211 IPR003593 GO:0016887
Glsi05g0248 952 SMART AAA_5 516 660 IPR003593 GO:0016887
Glsi05g0248 952 Gene3D - 63 242 IPR027417 -
Glsi05g0248 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 176 IPR027417 -
Glsi05g0248 952 SUPERFAMILY CYTH-like phosphatases 725 859 IPR033469 -
Glsi05g0248 952 CDD UMPK_like 64 226 - -
Glsi05g0248 952 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 472 687 IPR027417 -
Glsi05g0248 952 CDD UMPK_like 519 687 - -
Glsi05g0248 952 PRINTS Uridine kinase signature 517 534 - -
Glsi05g0248 952 PRINTS Uridine kinase signature 544 555 - -
Glsi05g0248 952 PRINTS Uridine kinase signature 638 648 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0248 Glsi-ChrGlsi05 48180694 48246759 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0248 512 675 PRT Gene Family AT1G55810 24.719 1.14e-08 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0248 05 48180694 48246759 Glsi02g0984 02 6536197 6545988 CCT
Glsi05g0248 05 48180694 48246759 Glsi05g0248 05 48180694 48246759 ECH