Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0242 ATGGCAGAGACTCCGTCTCAGCAACCGGGGCAACCCTTTCCCGAGATAGATACTCCGCAGTACTGGTGCTACCACTGCGATAAACGGGTGTCCGTAGCAACACTAGCTAACCTCCCTGACATTACCTGTCGGGAGTGCAATAACGGCTTCATCGAATCAATACTTCTGCCATCTCGGCCGCCGTCGGCTCCACCATCTGGGTCTTCCGATCAGGTCAACGATATCTATTTCGGGTCTCAATTTATGCAGGTGCTCCGCCTAATCACCCAAACTGCGCACGACGACGACGTGTCTCCTCCGCCACCTCCAGATCGTTCGTCGGATGATGATTTTCTCAGGATTGAGATCGATGGGTGGGATAACGATGAGGAGCACAACGAAGACGACCGAGTGGAGTTTCAGGACGATGGAGAAGAGCACGAAGTTAGTGAAGAGCACCAAGCAACGCTTCATACTCATGATGATCCACATGGAGACGACGAAGATCTGCAGCGAAGGAGGCGTGATGTGCTTCAACTACGTATCAGAGAATTGGCGACTCGCACGAGAAGTATGAGGAGCCGAATCTTGGATTGGGCTGAGGTATTGATGGGTCTGGAAGACAATTCCATCGAGTTTCAGGTTCATGTTCCGGAATCGGATTGGTTAATTGGCAGCCCGGAAGATTACGCGGATGCAGCTGAGTATGAAGCGTTGCTGCAGACCTTGGCAGAGGGCGACGGAGGAGGGAGGAGAGGAGCCCCGCCGGCTGCGAAGTCTTCAATAGAGGCATTACCAACAGTGGAGATTGTGTCGGAGAATGAAGCTCTGGTTTGCGCAATATGTAAGGATTTGGTCGGTGTTGGAGATATGGCAAAGACAATGCCTTGTGGGCATCATTATCATGGGGATTGCATAATTCCCTGGTTGGGTTCCAGAAATTCTTGCCCAGTATGCAGGTTTGAGCTGCCCACGGATGACCAGGAATATGAGGCGGAAAGGAAGAAGAGAGCAACGGCTTCAGCTAGTAGGGCATCGGGTTCGGGTTGA 1029 0.5219 MAETPSQQPGQPFPEIDTPQYWCYHCDKRVSVATLANLPDITCRECNNGFIESILLPSRPPSAPPSGSSDQVNDIYFGSQFMQVLRLITQTAHDDDVSPPPPPDRSSDDDFLRIEIDGWDNDEEHNEDDRVEFQDDGEEHEVSEEHQATLHTHDDPHGDDEDLQRRRRDVLQLRIRELATRTRSMRSRILDWAEVLMGLEDNSIEFQVHVPESDWLIGSPEDYADAAEYEALLQTLAEGDGGGRRGAPPAAKSSIEALPTVEIVSENEALVCAICKDLVGVGDMAKTMPCGHHYHGDCIIPWLGSRNSCPVCRFELPTDDQEYEAERKKRATASASRASGSG 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0242 342 SMART ring_2 272 312 IPR001841 -
Glsi05g0242 342 Pfam zinc-ribbon 20 54 IPR039525 GO:0061630
Glsi05g0242 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 139 317 - -
Glsi05g0242 342 MobiDBLite consensus disorder prediction 118 164 - -
Glsi05g0242 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 319 IPR013083 -
Glsi05g0242 342 ProSiteProfiles Zinc finger RING-type profile. 272 313 IPR001841 -
Glsi05g0242 342 FunFam E3 ubiquitin-protein ligase RING1-like 235 319 - -
Glsi05g0242 342 Pfam Ring finger domain 272 313 IPR001841 -
Glsi05g0242 342 MobiDBLite consensus disorder prediction 121 135 - -
Glsi05g0242 342 MobiDBLite consensus disorder prediction 136 164 - -
Glsi05g0242 342 SUPERFAMILY RING/U-box 266 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0242 Glsi-ChrGlsi05 47962469 47963497 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0242 103 329 C3H Transcription Factor Family AT5G01980 35.319 1.20e-31 122