Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0239 ATGGAGCAGAGCTTTCTGGGTGTTCTCAAAGTTCGCATTAAAAGAGGTGTTAATCTTGCAATTCGCGATTCTCGTAGTAGTGATCCCTACGTTGTTGTCACCATGTGCGAACAGAAAAAGAAGACGAAAATTGTGAAAGGTAGCTGCAATCCTGAGTGGAATGAAGAATTTTCACTGTATTTGAAGAATGTTACCACTCCAATTCAACTTACAGTTTATGACAAAGACACTTTCTCTGATGATGACCATATGGGGGAAGCAGACATACAAATAAAGCCATATCTTGAGTGTGTGAAGATGGACTTGTCTGGGCTCCCAAATGGCTGTGCAGTCAGGAAAGTTCAACCAGGTAGGAACAACTGCCTTGCCGAGGAGAGCTGCTGCACATGGAATGATGGGAAAATCACCCAAGAGATGTTTCTTAGATTGAAAAATGTTGAGTGTGGCGAAGTAGTGGTGGAGATAGAGTGGTTTGATATTCCAGGTGGTAAGGGCTTGTCAGAGGTTGAGTTACACGTTTGTCCCCGTTCCTCAATGTATACAGAGTATTGA 552 0.4293 MEQSFLGVLKVRIKRGVNLAIRDSRSSDPYVVVTMCEQKKKTKIVKGSCNPEWNEEFSLYLKNVTTPIQLTVYDKDTFSDDDHMGEADIQIKPYLECVKMDLSGLPNGCAVRKVQPGRNNCLAEESCCTWNDGKITQEMFLRLKNVECGEVVVEIEWFDIPGGKGLSEVELHVCPRSSMYTEY 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0239 183 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Glsi05g0239 183 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 5 164 IPR044562 -
Glsi05g0239 183 Pfam C2 domain 7 93 IPR000008 -
Glsi05g0239 183 SMART C2_3c 8 103 IPR000008 -
Glsi05g0239 183 CDD C2_ArfGAP 6 149 - -
Glsi05g0239 183 Gene3D C2 domain 4 170 IPR035892 -
Glsi05g0239 183 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 4 160 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0239 Glsi-ChrGlsi05 47512232 47514667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0239 39 167 C2H2 Transcription Factor Family AT1G70790 58.015 5.98e-54 167