Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0227 ATGTCGGCTTCTTCCTCATCTGCACCGTTCTTTGGAATCAGAGAGGAAAACCCAATTCAGATGAAACAACCCTCCGCAGCTGCTTCCTCAACTGCTCCAACCATAGTGCCTCAAAAGAAAAGGAGGAATCAACCTGGAACACCAAATCCAGATGCGGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATATGTGAGGTATGCAACAAAGGATTCCAAAGGGAGCAAAACCTACAGCTACACAGAAGAGGACACAACCTGCCTTGGAAGCTAAAGCAGAAGACTACAAAGGACCCAAAGAGAAAGGTTTATCTGTGTCCCGAGCCCACATGCGTCCACCATGACCCTTCAAGGGCTCTGGGCGACCTCACAGGGATTAAGAAGCACTACTCTCGCAAGCATGGCGAGAAAAAGTGGAAGTGCGATAAGTGCTCGAAGAAATATGCTGTTCAGTCAGATTGGAAAGCACATTCAAAAACTTGTGGCACGAGAGAATATAGATGTGACTGTGGCACCCTCTTCTCCAGGCGTGACAGTTTCATCACCCATAGGGCCTTCTGTGATGCACTTGCGCAGGAGAGTGCAAGGCACCCTACCCAATTAAACCCTATGGGGACTCATCTGTATGGCACGAACCACATGAATTTAGGTCTATCACAAGTGGGTTCCCCAATTTCTCAACTCCAAAACCAGAACACCAACAGTATCTTGCAGCTTGGAAATGCTGGGGCAGCAAAGTTTGAGCACCTAATCCCATCTTCAAATCAGTCTCCATTTGGGCAGTCACCCCAATCAATGCCCTCCTCTGCTTTTTTCATGACTGACACAAATCAAGGATTTCAAGATCATCAATCTCAGCAACTACCATTCTCAAGCAAGCCAATACATGGTCTTATGCAGCTACCTGATCTACAAGGCAACCCCAATAACAACACCCCTTCTGCCCCCGTACCTGCTCCTTCCAATCTTTTTAACCTCAGCTTCTTTCCAAATAGTAGTAACAATGGCAGCTTAATCGCTGATCAGTTTAACAATGTGAGTGGTGGTGGTAACCAAGGAGCAATACTCTACTCTAATAACCCTATTGGTGATCAAGTTGGGTCAGGTTTACCCTCATCACTCTTCAGCAATTCAATGCAACACGAAAATGTTTCCCCGCATATGTCAGCGACTGCGTTGCTCCAGCAAGCTGCTCAAATGGGTTCAACCACAACCAGAAACAGTTCCTCGTTACTAAGAGAAATAAATAATTCGTCAACTAATGGTGCTAAATCTGACAGGCAACTTCTGTCGGATAGTCTTGCCGCTTTCGGAAGTAATAGTAGTGGAGAGGGGCTAAGATCAAGCACAGAAAATGACCATCACCATCTCCGAGGACTGATGAACTCTCTTGCCAACGGGAATACTTCCATATTTGGCAATGTGCAAGGGAATGAGTCCAAGTTGCACCAAAATCTTGGTCTGAATTTTGGAGAGTCTGATAAGTTAACGTTAGACTTTTTGGGTGTTGGAGGAATGGTGAGAAACATGAATGGTGGATTTTCACAAAGAGAAGAACAGGCTATTAATATAAGTTCTTTGGAACCTGAACTCAAGTCAGCACAGGCAAGCCAACCTTTCAGAAGCACAACGCTGCAATAA 1656 0.4547 MSASSSSAPFFGIREENPIQMKQPSAAASSTAPTIVPQKKRRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKDPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTQLNPMGTHLYGTNHMNLGLSQVGSPISQLQNQNTNSILQLGNAGAAKFEHLIPSSNQSPFGQSPQSMPSSAFFMTDTNQGFQDHQSQQLPFSSKPIHGLMQLPDLQGNPNNNTPSAPVPAPSNLFNLSFFPNSSNNGSLIADQFNNVSGGGNQGAILYSNNPIGDQVGSGLPSSLFSNSMQHENVSPHMSATALLQQAAQMGSTTTRNSSSLLREINNSSTNGAKSDRQLLSDSLAAFGSNSSGEGLRSSTENDHHHLRGLMNSLANGNTSIFGNVQGNESKLHQNLGLNFGESDKLTLDFLGVGGMVRNMNGGFSQREEQAINISSLEPELKSAQASQPFRSTTLQ 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0227 551 MobiDBLite consensus disorder prediction 22 45 - -
Glsi05g0227 551 Gene3D Classic Zinc Finger 122 201 - -
Glsi05g0227 551 MobiDBLite consensus disorder prediction 1 52 - -
Glsi05g0227 551 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Glsi05g0227 551 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Glsi05g0227 551 FunFam protein indeterminate-domain 12-like 47 115 - -
Glsi05g0227 551 Gene3D Classic Zinc Finger 47 116 - -
Glsi05g0227 551 FunFam protein indeterminate-domain 5, chloroplastic-like 122 201 - -
Glsi05g0227 551 SMART c2h2final6 144 164 IPR013087 -
Glsi05g0227 551 SMART c2h2final6 109 139 IPR013087 -
Glsi05g0227 551 SMART c2h2final6 68 90 IPR013087 -
Glsi05g0227 551 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 520 IPR031140 -
Glsi05g0227 551 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Glsi05g0227 551 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0227 Glsi-ChrGlsi05 46114899 46118196 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0227 38 517 IDZ Gene Family AT2G02070 50.562 2.11e-139 415
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g0227 zf-C2H2_jaz 3.3e-05 CL0361