Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0223 ATGACCAACCTTGGCATAATATCTTATACACAAAGGGAGTTAGGCGAGTTTAAAGTGGAAAATAAAATAAAAATCATTTGTTCCCGTCACCCTCGTACTCACGATCGTCGACGCCAGTCCCTTCTCTATCGCATTGCCTCGCCTAGTCGCTACAATTGCCGCCGTCGTTGCTGCCAACAGCTGCCGCCGCCCCCACCTCCCCTCAGCCGAAACTTAGAAGAAAACACTTGCTTCTCTCATCCTTCAGAAAGTAGAAACCTAGAGGAAAGCGAGGGAATCATGAGGCCGATTTTGATGAAGGGCCATGAGAGGCCATTGACATTCCTCAAGTACAACAGAGATGGTGATCTGCTTTTCTCTTGTGCTAAGGATCACAACCCCACCGTCTGGTTCGCCGACAATGGTGAACGCTTGGGCACTTATCGTGGACACAACGGTGCTGTTTGGTGCTGCGATGTCTCAAGAGACTCAATGCAACTTATAACGGGTAGTGCGGATCAATCAGCAAAACTATGGAATGTTCGAACTGGGCAGCAATTGTTCACATTCAATTTTGATTCTCCTGCTAGGTCTGTGGACTTTGCTGTGGGAGACAAGCTTGCTGTTATTACAACTGACCCCTTCATGGAATTGCCTTCTGCAATTCATGTCAAATGCATTGCTAGAGATCCCAGTGACCAGACGGGTGAATCTGTGCTTGTCATTAAGGGCCCTCAAGGAAGAATAAATAGAGCCATTTGGGGACCCCTGAACAGAACCATTATTAGTGCTGGAGAAGATGCAGTGATTCGCATATGGGATTCTGAGACAGGAAAATTACTTAAAGAGTCAGACAAGGAATCTGGCCACAAAAAGACTATAACATCACTTGCAAAATCTGCAGATGGTTCGCATTTCCTGACTGGCTCCCTGGATAAATCTGCTAGGCTTTGGGATAACAGAACATTGACTCTTATCAAGACATATGTAACAGAACGCCCAGTCAATGCAGTTGCAATGTCGCCTCTTCTTGATCATGTAGTTATTGGAGGTGGTCAGGATGCGTCAGCTGTTACAACTACTGACCATCGTGCAGGGAAATTTGAAGCCAAATTTTTTGACAAGATTCTTCAAGAAGAAATTGGGGGCGTGAAAGGGCATTTTGGACCAATTAATGCACTGGCCTTTAACCCTGATGGAAAGAGCTTTTCAAGTGGAGGCGAAGATGGTTATGTAAGGTTGCATCACTTCGACCCAGATTACTTCAATATTAAAATATAG 1260 0.4532 MTNLGIISYTQRELGEFKVENKIKIICSRHPRTHDRRRQSLLYRIASPSRYNCRRRCCQQLPPPPPPLSRNLEENTCFSHPSESRNLEESEGIMRPILMKGHERPLTFLKYNRDGDLLFSCAKDHNPTVWFADNGERLGTYRGHNGAVWCCDVSRDSMQLITGSADQSAKLWNVRTGQQLFTFNFDSPARSVDFAVGDKLAVITTDPFMELPSAIHVKCIARDPSDQTGESVLVIKGPQGRINRAIWGPLNRTIISAGEDAVIRIWDSETGKLLKESDKESGHKKTITSLAKSADGSHFLTGSLDKSARLWDNRTLTLIKTYVTERPVNAVAMSPLLDHVVIGGGQDASAVTTTDHRAGKFEAKFFDKILQEEIGGVKGHFGPINALAFNPDGKSFSSGGEDGYVRLHHFDPDYFNIKI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 141 178 - -
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 377 407 IPR001680 GO:0005515
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 280 321 IPR001680 GO:0005515
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 280 312 - -
Glsi05g0223 419 ProSitePatterns Trp-Asp (WD) repeats signature. 160 174 IPR019775 -
Glsi05g0223 419 SMART WD40_4 92 131 IPR001680 GO:0005515
Glsi05g0223 419 SMART WD40_4 228 267 IPR001680 GO:0005515
Glsi05g0223 419 SMART WD40_4 270 312 IPR001680 GO:0005515
Glsi05g0223 419 SMART WD40_4 370 409 IPR001680 GO:0005515
Glsi05g0223 419 SMART WD40_4 315 354 IPR001680 GO:0005515
Glsi05g0223 419 SMART WD40_4 134 173 IPR001680 GO:0005515
Glsi05g0223 419 Pfam WD domain, G-beta repeat 376 407 IPR001680 GO:0005515
Glsi05g0223 419 Pfam WD domain, G-beta repeat 281 312 IPR001680 GO:0005515
Glsi05g0223 419 Pfam WD domain, G-beta repeat 136 173 IPR001680 GO:0005515
Glsi05g0223 419 CDD WD40 100 407 - -
Glsi05g0223 419 Hamap Eukaryotic translation initiation factor 3 subunit I [EIF3I]. 94 419 IPR027525 GO:0003743|GO:0005737|GO:0005852
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 141 182 IPR001680 GO:0005515
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 99 140 IPR001680 GO:0005515
Glsi05g0223 419 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Glsi05g0223 419 Gene3D - 94 419 IPR015943 GO:0005515
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 377 407 - -
Glsi05g0223 419 PRINTS G protein beta WD-40 repeat signature 299 313 IPR020472 -
Glsi05g0223 419 PRINTS G protein beta WD-40 repeat signature 160 174 IPR020472 -
Glsi05g0223 419 PRINTS G protein beta WD-40 repeat signature 254 268 IPR020472 -
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 272 - -
Glsi05g0223 419 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
Glsi05g0223 419 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT I 94 418 - -
Glsi05g0223 419 SUPERFAMILY WD40 repeat-like 96 407 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0223 Glsi-ChrGlsi05 45653011 45672494 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0223 94 419 Eukaryotic Initiation Factors Gene Family AT2G46290 80.793 0.0 562