Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0208 ATGGCAGCGGCCTTTATCAAGTTGGATGATTCCCCAATGTTTCAGAAGCAGATATGTTCTCTTGAACAAACAGCTGATGAGTTAACAGATCGCTGTCAGAAACTATACAAAGGGTGTAAGAAATTTATGGGAGCTTTGGGAGAAACATATAATGGAGACATTGCATTTGCTGATGCTTTAGAAGAATTTGGTGGTGGGCAGGATGATCCTGTTAGTGTATCAATTGGAGGACCTGTCATATCTAAGTTCATTGGAGCACTTCGTGAACTAGCTACTTTTAAAGAGCTTCTTCGGTCACAGGTAGAACATGTGCTGATTGATCGGCTGATGCAGTTTTTGACTGTTGATTTGCGAGATGCAAAGGATTCTCGCCGACGCTTTGACAAAGCTATACATTCTTATGATCAGGCACGAGAAAAATTTGTTTCTTTGAAGAAGAATACGCGGGGAGATATCGTTGCTGAATTAGAAGAGGATCTTCAAAATTCAAAGTCTGAATTTGAGAAAAGTCGCTTCAATCTAGTAAACTCACTCATGAATATTGAAGTGAAAAAGAAGTATCAGTTTTTGGAATCCTTTAGCGCAATAATGGATGCTCATCTGAGATACTTCAAGCTGGGTTATGACTTACTGAACCAAATGGAACCTTATATTCACCAGGTACTGACATATGCACAACAATCTAAAGAGTTGGCTAATATTGAGCAAGATAAGCTTGCAAAGAGGATCCAAGAATACAGAACACAAGCTGAGCTCGACAATATGCAAGCTTCTAGCAATGCAGATTCTTTGTCAGGTGTTGATGGCACCCGGGTTGTTGGTTTGAACTCTTATAAAAGCTTTGAAGCAGTGATGCAGTCTGCACCGAAAGGTGAGGCTCAAACAATTAAACAGGGATATCTGCTAAAACGATCATCAAGCTTGCGAGGAGATTGGAAGCGGAGGTTCTTTGTACTTGACAGCCAAGGGAAATTATATTATTATAGAGTGAAGGGAGCCAAATCTATGGGCTCTCAATCATATAATTTTACTCGTTCTGCTGAACAAAACAGTGGAATGTTTGGTAGATTCCGCTCTAGGCACAACAGGGCAGCATCGCTAAGTGAAGAAATTCTGGGTTGTCGTGCAGTTGATCTGTGCACATCAACTATAAAGATGGATGCAGAGGATACAGATCTACGACTTTGCTTCCGTATAATTTCTCCATCAAAAACATATACACTGCAGGCTGAGAATGAAGCTGATAGGATGGACTGGGTAAATAAAATTACTGGAGCTATCACATCACTTTTTAATTCTCAGTTTCTTCAACAGCCTCATCAAGTTACAGGGCATCTAGAAAATAATATCCCAGCCTCTGGTGGTTCATGGAATAGTGGTTTACAGGATAGACATGTATGTTTGATGGAAGACATATATTCCAAGGATGTGGACAGTGTCTCTAAAATTTTACGGGGAATTCCTGGGAATGATATATGTGCTGAGTGTAGTGCTCCTGAGCCAGACTGGGCATCTCTAAACCTTGGCATACTGCTGTGCATTGAATGCTCCGGTGTTCATCGAAATCTTGGAGTTCACATCTCAAAGGTGAGATCTATCACATTAGATGTCAAGGTTTGGGAACCTACTATTTTGGACTTATTCCAGAACTTGGGTAATGCATATTGTAAAACTGTCTGGGAAGGATTGTTACATGATGATGAAAGAAAAAGTGAAACAAATGCACCTATCAAACCGTGCTCCACCGATGCCTTCCGACACAAGGAAAATTACATCCAAGCAAAGTACATAGACAAATCACTAATCATCAAAGAAGAGGTTGTACCCGAGAACCATTCTCCTGCCATAAGAATCTGGCAAGCAGTTCAGGCTATAAATATAAGAGAAGTGTATCGCCTCATTGTCACATCAGATGCAGCTCTGGTAAACACCAAATACGATGATGTAGTTTGCCATGCTGCTACAGAGAATTTGGTATTTGGATGTAACACAGCTGAAAATCAGGAAGGTCTTGAAGCCTGTCTGAGAAATAAAGTATCTAATGAGCCGGTGAGTTGTCTCCAAGGTTGTTCATTATTGCATCTGGCATGTCATTTTGACAGTGCACTAATGGTTGAGTTGTTGCTTCAATTTGGTGCTGATGTAAATATGCGTGACTTCCATGGAAAAACTCCCTTGCATCATTGCATCTCTAATGGAAAAAATTCATTGGCAAAGCTTCTACTTAGAAGGGGTGCAAGACCGTCAATTAAGGATGGCGATGGACTCACTGCACTTGAAAGAGCAATGGAGATGGGGGCAATAACTGATGAAAAGTTATTTATTTTGCTTGCTGAATGCGAGTAA 2346 0.4058 MAAAFIKLDDSPMFQKQICSLEQTADELTDRCQKLYKGCKKFMGALGETYNGDIAFADALEEFGGGQDDPVSVSIGGPVISKFIGALRELATFKELLRSQVEHVLIDRLMQFLTVDLRDAKDSRRRFDKAIHSYDQAREKFVSLKKNTRGDIVAELEEDLQNSKSEFEKSRFNLVNSLMNIEVKKKYQFLESFSAIMDAHLRYFKLGYDLLNQMEPYIHQVLTYAQQSKELANIEQDKLAKRIQEYRTQAELDNMQASSNADSLSGVDGTRVVGLNSYKSFEAVMQSAPKGEAQTIKQGYLLKRSSSLRGDWKRRFFVLDSQGKLYYYRVKGAKSMGSQSYNFTRSAEQNSGMFGRFRSRHNRAASLSEEILGCRAVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNSQFLQQPHQVTGHLENNIPASGGSWNSGLQDRHVCLMEDIYSKDVDSVSKILRGIPGNDICAECSAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILDLFQNLGNAYCKTVWEGLLHDDERKSETNAPIKPCSTDAFRHKENYIQAKYIDKSLIIKEEVVPENHSPAIRIWQAVQAINIREVYRLIVTSDAALVNTKYDDVVCHAATENLVFGCNTAENQEGLEACLRNKVSNEPVSCLQGCSLLHLACHFDSALMVELLLQFGADVNMRDFHGKTPLHHCISNGKNSLAKLLLRRGARPSIKDGDGLTALERAMEMGAITDEKLFILLAECE 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0208 781 Gene3D - 293 432 IPR011993 -
Glsi05g0208 781 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Glsi05g0208 781 ProSiteProfiles ARF GTPase-activating proteins domain profile. 478 609 IPR001164 GO:0005096
Glsi05g0208 781 SMART PH_update 295 430 IPR001849 -
Glsi05g0208 781 Pfam Ankyrin repeats (3 copies) 693 767 IPR002110 GO:0005515
Glsi05g0208 781 ProSiteProfiles Ankyrin repeat region circular profile. 688 719 - -
Glsi05g0208 781 Gene3D Arfaptin homology (AH) domain/BAR domain 7 252 IPR027267 -
Glsi05g0208 781 Pfam PH domain 296 427 IPR001849 -
Glsi05g0208 781 Pfam Putative GTPase activating protein for Arf 481 602 IPR001164 GO:0005096
Glsi05g0208 781 ProSiteProfiles PH domain profile. 294 428 IPR001849 -
Glsi05g0208 781 Gene3D - 612 775 IPR036770 -
Glsi05g0208 781 PANTHER CENTAURIN/ARF 5 778 IPR045258 GO:0005096
Glsi05g0208 781 Pfam BAR domain of APPL family 8 230 IPR004148 GO:0005515|GO:0005737
Glsi05g0208 781 Coils Coil 229 249 - -
Glsi05g0208 781 CDD PH_ACAP 297 432 - -
Glsi05g0208 781 Coils Coil 153 173 - -
Glsi05g0208 781 ProSiteProfiles Ankyrin repeat profile. 688 720 IPR002110 GO:0005515
Glsi05g0208 781 SMART arf_gap_3 478 609 IPR001164 GO:0005096
Glsi05g0208 781 PRINTS HIV Rev interacting protein signature 509 526 IPR001164 GO:0005096
Glsi05g0208 781 PRINTS HIV Rev interacting protein signature 490 509 IPR001164 GO:0005096
Glsi05g0208 781 PRINTS HIV Rev interacting protein signature 532 553 IPR001164 GO:0005096
Glsi05g0208 781 SUPERFAMILY BAR/IMD domain-like 8 317 IPR027267 -
Glsi05g0208 781 CDD BAR_SFC_plant 16 217 IPR035670 -
Glsi05g0208 781 SUPERFAMILY Ankyrin repeat 686 774 IPR036770 -
Glsi05g0208 781 ProSiteProfiles Ankyrin repeat region circular profile. 721 752 - -
Glsi05g0208 781 SMART ANK_2a 688 717 IPR002110 GO:0005515
Glsi05g0208 781 SMART ANK_2a 721 750 IPR002110 GO:0005515
Glsi05g0208 781 CDD ArfGap 482 596 - -
Glsi05g0208 781 ProSiteProfiles Ankyrin repeat profile. 721 753 IPR002110 GO:0005515
Glsi05g0208 781 SUPERFAMILY PH domain-like 291 441 - -
Glsi05g0208 781 ProSiteProfiles BAR domain profile. 3 227 IPR004148 GO:0005515|GO:0005737
Glsi05g0208 781 SUPERFAMILY ArfGap/RecO-like zinc finger 480 602 IPR037278 -
Glsi05g0208 781 Gene3D Arf GTPase activating protein 472 611 IPR038508 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0208 Glsi-ChrGlsi05 43745683 43868401 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0208 478 596 C2H2 Transcription Factor Family AT3G07940 42.500 1.77e-19 87.4