Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0173 ATGTCTAACTCTGACGGTACTACCAACGGTGTGAGTAATGGCTCGATCATTGACCCACAGAGGCAGCAGTCATCCGGTAACGGTTCTCTTGCCGCGAAGAAGCCGCCGTCTAAGGACCGTCACAGCAAGGTCGATGGCCGTGGACGCCGTATACGCATGCCGATCATATGCGCTGCACGTGTCTTCCAGCTCACTCGTGAGTTGGGTCACAAATCCGACGGTCAAACCATCGAGTGGCTTCTCCGCCAAGCTGAGCCTTCCATCATAGCCGCTACTGGCACCGGTACTACTCCGGCAAGCTTCTCCACCGTCTCAGTCTCTGTTCGCGGTGGTGGGGGTAGTGTTTCTAGCTCCTTGTCCTCGTCTTCGACCACGTCTACTTCTCTGGACCACAAACCCCTGCTGGGTCCGACGCCTTTCATACTCGGGAAGCGCATACGGACCGATGATGACGCCGCCAAGGATGATGGCGTCTCTGTGGGAGCCACTGTAGGGTCTATAGTGGGGCCTACTACCCCAGCCGGGTTGTGGGCCCTTCCGGCGAGGCCCGATTTCGGGCAAGTATGGAACTTTGCTGCGGCGGCTCCCCCGCCGGAAATGGTGGTGCAACCTGCGGCAGTGTCGGTATCTCAGCAGCATGCTTCGTTATTCGTTCATCATCAGCATCAGCAGCAACAAGCCATGGGCGAGGCGTCGGCAGCTAGACTGGGGAATTACCTTCCAGGGCATCTGAATTTGCTGGCTTCATTGTCAGGAGGGCCTGGAAATTCGGGTCGGAGGGACGATGAACCTCGTTGA 798 0.5777 MSNSDGTTNGVSNGSIIDPQRQQSSGNGSLAAKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSTVSVSVRGGGGSVSSSLSSSSTTSTSLDHKPLLGPTPFILGKRIRTDDDAAKDDGVSVGATVGSIVGPTTPAGLWALPARPDFGQVWNFAAAAPPPEMVVQPAAVSVSQQHASLFVHHQHQQQQAMGEASAARLGNYLPGHLNLLASLSGGPGNSGRRDDEPR 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0173 265 MobiDBLite consensus disorder prediction 1 50 - -
Glsi05g0173 265 MobiDBLite consensus disorder prediction 1 31 - -
Glsi05g0173 265 MobiDBLite consensus disorder prediction 34 50 - -
Glsi05g0173 265 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 11 241 IPR005333 GO:0003700
Glsi05g0173 265 Pfam TCP family transcription factor 37 126 IPR017887 -
Glsi05g0173 265 ProSiteProfiles TCP domain profile. 37 91 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0173 Glsi-ChrGlsi05 38195561 38196358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0173 12 265 TCP Transcription Factor Family AT5G23280 65.370 5.65e-100 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Glsi05g0173 TCP 6e-33 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Glsi05g0173 05 38195561 38196358 Glsi05g0173 05 38195561 38196358 ECH