Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0161 ATGTCTCAGACATCCAGGGTCCCACCCGCCGTCCAATCCGTCAAATCATTGCCGACTGTGTTCAAGTTTACAGGTAATCCAACCCCTGATCTTCTGGAAGAACATGGAAATGTTAAGGTGGGAAGCACTGATGTGATAGCATCAAGTAATCCTGAAAATGGTGCTATAGGAAGGGAGGTTTCTGAGGAAGTTGAGGACTGTGCAGGTGAGATGGATTTCTTTGATGAGGACTCACCATATGGTGAAAAAACTACATTATCAGAAAGTAGGTCCTCAAATGGGGATGAAGAAGTAGAATCTGTTCCTCTGCCCCTCCCATCAATCTCACAATCCTCTAGGGAACGCAGGTGGAGTGATACAACACCTTATGCTTCAAAGAAGAAGCATCAATCTTGGTTTCAACTTCCAAATGGGAATTGGGAGCTTGGGAACATAATATCAATTTCTGGAACTGAATCAATTATTACACTGCCTGATGGGAAGGTTTTAAAGGTGAAAGGTGAAAGTTTGGTACCAGCAAATCCTGACATTCTTGATGGAGTAGATGATCTCATGCAACTTAGTTATTTGAATGAGCCATCAGTTTTATACAATTTGCAGCATAGATACAATCAGAATATGATTTATACAAAAGCAGGGCCAGTTCTGGTTGCCATAAATCCCTTTAAGAAAGTTCTTCTGTATGGAAATGATTATATTGAAGCATACAAGCGTAAAGCAATTGAAAGCCCTCATGTATATGCCCTTACAGACACAGCCATCCAGGAAATGATACGGGATGAAGTCAATCAATCTATTATTATAAGTGGTGAAAGTGGAGCGGGGAAGACTGAGACAGCAAAGATAGCAATGCAGTACTTGGCTGCCCTTGGTGGTGGAAGTGGCATAGAGTATGAGATATTAAAGACTAATCCAATACTGGAAGCATTTGGTAATGCAAAAACATTGAGAAATGACAACTCAAGTCGATTTGGAAAGCTCATTGAGATACACTTTAGTGAGACTGGAAAAATATCAGGTGCTAATGTTCAAACATGTAAACACCATGTTGATTTGGCATGTGAACAGTCTAGAGTAGTCCAATGCAATGAAGGGGAAAGGTCATACCACATATTTTATCAGCTGTGTGCTGGGGCACCACCTTCTCTGAGGGGTAACTACTGGCTTTTAACCTTCAATTTCACTTTGTTGTACTTGTTGCATATTGAGGATACTAGTTCAGTCTCTATTGTCTAG 1236 0.4078 MSQTSRVPPAVQSVKSLPTVFKFTGNPTPDLLEEHGNVKVGSTDVIASSNPENGAIGREVSEEVEDCAGEMDFFDEDSPYGEKTTLSESRSSNGDEEVESVPLPLPSISQSSRERRWSDTTPYASKKKHQSWFQLPNGNWELGNIISISGTESIITLPDGKVLKVKGESLVPANPDILDGVDDLMQLSYLNEPSVLYNLQHRYNQNMIYTKAGPVLVAINPFKKVLLYGNDYIEAYKRKAIESPHVYALTDTAIQEMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEYEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANVQTCKHHVDLACEQSRVVQCNEGERSYHIFYQLCAGAPPSLRGNYWLLTFNFTLLYLLHIEDTSSVSIV 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0161 411 Gene3D Kinesin motor domain 150 407 IPR036961 -
Glsi05g0161 411 ProSiteProfiles Myosin motor domain profile. 179 411 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 SMART MYSc_2a 173 411 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 PRINTS Myosin heavy chain signature 305 332 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 PRINTS Myosin heavy chain signature 209 228 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 PRINTS Myosin heavy chain signature 263 288 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 Pfam Myosin head (motor domain) 181 391 IPR001609 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 126 175 IPR004009 GO:0003774|GO:0005524|GO:0016459
Glsi05g0161 411 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 391 IPR027417 -
Glsi05g0161 411 MobiDBLite consensus disorder prediction 72 123 - -
Glsi05g0161 411 MobiDBLite consensus disorder prediction 76 95 - -
Glsi05g0161 411 PANTHER MYOSIN 172 385 - -
Glsi05g0161 411 MobiDBLite consensus disorder prediction 104 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0161 Glsi-ChrGlsi05 37568862 37576233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0161 6 384 Myosins gene family AT1G50360 67.282 1.39e-167 498