Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0099 ATGGCGGCATCTTCTTCTTCGGCATCGCTGTTTGGAATTGGAGAAGGAGATCAGAATCCGATGAGTAAGCAGCATTCATTGACTCCAACTTCGTCAACAGCCCCAGCTGCATCACCCCAGCAGAAGAAGAGAAACCAACCTGGAACACCAAGCAAGTTTATATGTGAGGTATGTAACAAAGGGTTCCAAAGGGAGCAAAACCTACAGCTGCACAGAAGAGGACACAACCTGCCTTGGAAGCTTAAGCAGAAGACTACAAAAGACCCAAAGAGAAAGGTTTATTTGTGTCCCGAGCCCACATGCGTCCATCATGATCCTTCAAGGGCTCTGGGCGACCTCACAGGGATTAAGAAGCACTACTCTCGCAAGCACGGCGAGAAGAAGTGGAAGTGCGACAAGTGCTCAAAGAAATATGCAGTTCAGTCAGATTGGAAAGCACATTCAAAGACTTGTGGCACCAGAGAATACAGATGTGATTGTGGCACTCTCTTCTCCAGACGAGACAGTTTTATCACCCACAGGGCCTTCTGTGACGCACTGGCTCAAGAAAGTGCAAGACAACTATCCAACCTGATAAGTCCCACCATTGGCGGCCACCTATATGGAAGTAGCAACGTGGGCTTAGGCTTAACCCAGGTGGGACCCCAGATCCCCTCATTACATGACCAGAACAACCAAACTGGTGAGATTTTGAGACTCGGCGGTGCTCGGACTGGGCAATTCGACCACCTTCTTCCACCATTCCTGGGGTCATCTTTTAGACCTTCACAGCAGACCATTCCTTCACCCACTTTCTTCATGCCAGAATCAAATCAAAACTACCACCATGATCGCCAGAACCACTATTCTCAACAAGGGTTGGTCCAAAACAAGCCACTCCATGGACTAATGCAATTGTCCGATCTTCACAAAAGCAGCACAAACAATTCCCCAACATCAGGAGTCAACCTCTTTAACCTTCCATTCCTTTCAAATAGCAGCAACAACTCCTTCTCTGAACATTTCAACGATGGAAGTGGCAACGGCACCGGCGGAGTAGGAAATGAAGGCTCCAACTTTTTCTCTGCATCAGGTACTATAATGGGTGACCAAGCAAGCTCTAGTGTCCCTTCCCTTCTCAGCACATCCCTCAGAAACAGTAGCGCCATCCCTCACACGTCCGCGACAGCACTGCTTCAGAAGGCTGCTCAAATCGGTGCAAGTTCTAGCAACAGCACTGCCTCACTACTAAGGAGCTTTGGAAGCTCTTCGTCTAGCAGTGGATCTAAATCTGATCACAGACCACTTGTTTCTGCAAACTATGGCAGAACTTTCGGCAGAAACGATCAGAACAATCTGCAAGACCTGATGAACTCATTTACTGCTAGCGGGAGGTCTTCCATTTTTGAAAGTGGGTCTTCTGGAGGGCTTGCTGGTTATGAAGGATATTATCCTAATGCCAACAAAGACCCAAAACTGCAAACGATGAGCACTGGAGCAGGGTCGGACAGGCTCACTCGAGACTTCCTAGGGGTTGAGCAGATGGTAAGAAGCATGAATGGAGGAATTTCACGGAGAGACCAACAACAGCATCAGGAGCAGCGACAGCATGGGTTTAACTTGAGCAATTCCGAGACTGAGAGAAGTGCTGCGCCGTCAGGGCAATCTTTTGGAGGTGAGGGAATTTTCAGTGACTGA 1677 0.4848 MAASSSSASLFGIGEGDQNPMSKQHSLTPTSSTAPAASPQQKKRNQPGTPSKFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKDPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARQLSNLISPTIGGHLYGSSNVGLGLTQVGPQIPSLHDQNNQTGEILRLGGARTGQFDHLLPPFLGSSFRPSQQTIPSPTFFMPESNQNYHHDRQNHYSQQGLVQNKPLHGLMQLSDLHKSSTNNSPTSGVNLFNLPFLSNSSNNSFSEHFNDGSGNGTGGVGNEGSNFFSASGTIMGDQASSSVPSLLSTSLRNSSAIPHTSATALLQKAAQIGASSSNSTASLLRSFGSSSSSSGSKSDHRPLVSANYGRTFGRNDQNNLQDLMNSFTASGRSSIFESGSSGGLAGYEGYYPNANKDPKLQTMSTGAGSDRLTRDFLGVEQMVRSMNGGISRRDQQQHQEQRQHGFNLSNSETERSAAPSGQSFGGEGIFSD 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0099 558 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Glsi05g0099 558 MobiDBLite consensus disorder prediction 515 558 - -
Glsi05g0099 558 Pfam Zinc-finger double-stranded RNA-binding 52 75 IPR022755 -
Glsi05g0099 558 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 75 IPR013087 -
Glsi05g0099 558 SMART c2h2final6 53 75 IPR013087 -
Glsi05g0099 558 SMART c2h2final6 94 124 IPR013087 -
Glsi05g0099 558 SMART c2h2final6 129 149 IPR013087 -
Glsi05g0099 558 MobiDBLite consensus disorder prediction 1 48 - -
Glsi05g0099 558 Gene3D Classic Zinc Finger 107 187 - -
Glsi05g0099 558 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 522 IPR031140 -
Glsi05g0099 558 MobiDBLite consensus disorder prediction 1 50 - -
Glsi05g0099 558 MobiDBLite consensus disorder prediction 527 546 - -
Glsi05g0099 558 FunFam protein indeterminate-domain 5, chloroplastic-like 107 186 - -
Glsi05g0099 558 SUPERFAMILY beta-beta-alpha zinc fingers 53 149 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0099 Glsi-ChrGlsi05 32006717 32010723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0099 40 514 IDZ Gene Family AT2G02070 45.120 3.48e-115 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Glsi05g0099 zf-C2H2_jaz 2.6e-05 CL0361