Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glsi05g0091 | ATGTCAAACTCTATCACAGATACTGGAGAGAGACGAGAAGAGCAGAAGAACTGGAAAAGAGGAGGGCAGAGCATGTCAGAGTCAAACGCAGTAGCAAATGGGTTGGCTGGTGCAGGTGGTGGCATTATTGCTCAAATCATAACTTATCCTCTTCAAACGGTAAATACCCGTCAGCAAACCGAGAGAACGGTCAAGAGGAAGAAGGTGGGGCAACCTCTTTCCCCTAACAGAACCAACGTTCCGGCACCTGGCACTCTTCTTCAGATCCTCCAGGTTATTAGAAGCGATGGCTGGGGTGGACTCTACAGCGGCCTCAAGCCTTCTCTTCTTGGAACTGCTGCTTCTCAGGGCATTTATTACTACTTTTATCAAGTTTTTAAAAACAAGGCAGTGGCCATTGCTGCTGCCCGTAAAGTCAAAGGATATGGAGACGGTACTGTTGGAATGTTTGGTTGGCTTGTTGTAGCTGCTATTGCCGGGTCTTTGAATGTTTTATTTACAAACCCAATATGGGTTATAGTGACTCGCATGCAGACACATACTCAAGCAGAAAGAAAAATTATGGAGGGAAAGAAAGAAGCTTTAAGGAGGGAAGCTTCTGAAAGCATTTCAGAAGGTTCAACATTACAAGACAAATTAGCTGAACTGGATTCCATAAAACCTCAATCATATGGAACTTTACATGCTGTAAATGAAATCTATACTGAAGCAGGTATTATTGGATTTTGGAAGGGTGTCATCCCTTCTCTGATTATGGTGTGCAATCCATCGATCCAGTTTATGATTTATGAGAGCTCGCTAAAGCATTTAAGGGCAAAACACTCTGCTAAGAAACAGGGGAATAAAAGTGTAACTGCCTTGGAGGTCTTTTTGCTGGGAGCCTTAGCAAAACTTGGAGCTACTGTCTCAACATATCCCCTGTTGGTTGTTAAGTCAAGGCTTCAAGCTAAACAGGAGATTGGTGGAAATAGCTCGTTAAGATACTCAGGTACTTTTGATGCTATACTTAAAATGATCCATTATGAGGGACTGCCTGGCTTTTATAAGGGGATGAGCACAAAGATAGTCCAGAGTGTTTTTGCAGCTTCTGTTCTATTCATGGTTAAGGAGGAGCTTGTTAAGGGTTACATGATGTTGGCATATAAGAGCAAGAAAGTTCTTTTAAATTTGAGTAGTTGA | 1179 | 0.4241 | MSNSITDTGERREEQKNWKRGGQSMSESNAVANGLAGAGGGIIAQIITYPLQTVNTRQQTERTVKRKKVGQPLSPNRTNVPAPGTLLQILQVIRSDGWGGLYSGLKPSLLGTAASQGIYYYFYQVFKNKAVAIAAARKVKGYGDGTVGMFGWLVVAAIAGSLNVLFTNPIWVIVTRMQTHTQAERKIMEGKKEALRREASESISEGSTLQDKLAELDSIKPQSYGTLHAVNEIYTEAGIIGFWKGVIPSLIMVCNPSIQFMIYESSLKHLRAKHSAKKQGNKSVTALEVFLLGALAKLGATVSTYPLLVVKSRLQAKQEIGGNSSLRYSGTFDAILKMIHYEGLPGFYKGMSTKIVQSVFAASVLFMVKEELVKGYMMLAYKSKKVLLNLSS | 392 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0091 | 392 | Gene3D | Mitochondrial carrier domain | 211 | 385 | IPR023395 | - | |
| Glsi05g0091 | 392 | SUPERFAMILY | Mitochondrial carrier | 29 | 371 | IPR023395 | - | |
| Glsi05g0091 | 392 | PANTHER | MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED | 29 | 377 | IPR044712 | GO:0006862|GO:0055085 | |
| Glsi05g0091 | 392 | Pfam | Mitochondrial carrier protein | 283 | 376 | IPR018108 | - | |
| Glsi05g0091 | 392 | Pfam | Mitochondrial carrier protein | 147 | 271 | IPR018108 | - | |
| Glsi05g0091 | 392 | Pfam | Mitochondrial carrier protein | 28 | 128 | IPR018108 | - | |
| Glsi05g0091 | 392 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 284 | 375 | IPR018108 | - | |
| Glsi05g0091 | 392 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 28 | 129 | IPR018108 | - | |
| Glsi05g0091 | 392 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Glsi05g0091 | 392 | MobiDBLite | consensus disorder prediction | 58 | 77 | - | - | |
| Glsi05g0091 | 392 | Gene3D | Mitochondrial carrier domain | 10 | 210 | IPR023395 | - | |
| Glsi05g0091 | 392 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 147 | 269 | IPR018108 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Glsi05g0091 | Glsi-ChrGlsi05 | 29700029 | 29727196 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Glsi05g0091 | 91 | 385 | Chloroplast and Mitochondria Gene Families | AT2G47490 | 28.188 | 1.22e-25 | 103 |