Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0072 ATGGGCAAGTCTAGCAAGAAATCAGCTCCTAAAGTTGACGCTGCTCCAGCTGTCGTTCCGCCTTCAAAGTCTGCCAAGAATGGCAAGAGGGAGGCTGAGGATGAACTTGAGAAACAAGTGAGTACAAAGAAGCAGAAGAGAGATGAGGTTGCTGAGAAGAAAAAGAAGGAAGCAAAATTGCAGAAGAATAAGAAGGAAAACAGTTCGGATGATTTCTCATCAGATTCTGAGGAAGATAAGAAACCTGCTGTTAAACCCGCCGCTCCTTCAAAGACACAACCTGCTAAAAATGGTACTCTAACTATGCCCACTTACAAAGGCAAGCAAGTTGGTAGTTCCAGTTCTTCTGGATCCTCAGATGATGATTCTGATGACAATGAAGCTAAAAATTCCAAGGTAACTGCAAAATCCAAGGTGGCCTCTGCTTCTGGTAAGAATGGAAATGTTGCTACGAAGAAGAAAGTTGAATCAAGTGACAGCTCAGATACTGATAGTAGCTCAGAAGAAGAAAGTGATGAAAGAACTAAAGTTGCCCCATTTTCCAAGAAGTTACCTAATGCTGCTGCTAAGAAAGTTGAATCAAGTAGTGAAACCTCAGATTCGGAATCTGAGAGCAGCTCTGATGAGGATGATGTAGCTAAATCATCAAAAAAGTTGCCTGATGCAGGTAAGAGTATACCTGCCAAGAAAATTGAGTCGAGTGATGACACAGCCTCTGACAGTAGCTCAGATGAAGATGATGGAACACAGATTTCTCTATCATCCAAGAAGTTGCCTGCTTCAACAGCTGTTTCAAAGAAGAAAGTTGAGAGCAGTGACAGCTCAGATGTTGAATCAAGTGAAAGCTCCGATAAAGATAATCATATAAAACGAGCTGTCACTGCAGTGCCCAAGCCTTCTGCTACTCCTAAGAAGGTTGAATCAAGTGACAGCTCCGGATCTGATAGCAGTAGCTCTGATGAAGACAACAAAAATAAAAATGGAGTCAAGACTGCTTCCAGTCTCAAGTTATCAAAAACTTTTGAAAAGAATTCCAAGTCAAGTGATAGTTCTGATGAGACTGGTTCTGATGAAGAGGAGGAGTCCTCTGACAGTGATTCTGAGGATGGAAAGAAAACTGCAAAAGTTCCTAAGGCTAATATTAAAGCAGCAGCTGGTGTAAAGACGGCCAAAAAGGAGTCTAGCGAAAGTTCATCTGAAGATGACTCTTCAGAAGATGAGGGAAAGATGGATATTGACGAGGATGGAAGTTCTGAAGAAACCAATGAAGAGCCACAAAAGAAAAAGACAAAAGCCTTGCCTCTGAAAGCTTTGAAAGAAAGCAGCAACAGTTCAGATAGCTCAGAGGACAGTGAGGAGGAGATTGAGGAGAAACCATCTAGAACTCCTCAGAAAAATGCTATGGATGTGGAGATGGTTAATGCCGCCTCAATGAAGTCAAATGGAAAGAAAGTTCCTAAAACCCCAGGTACTCCAAAAGAACAAAATGCCACATCCAAGACACTATTTGTTGGAAACCTGGCATTTAAAGTAGAGCGGGCTGATGTGGAAAATTTCTTCAAAGAATGTGGAGAAGTTGTGGATGTTCGTTTGGCTGTAGATGATGATGGGAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCCTCAGCAGAAGCAGCTCAAAATGCCCTGGAGTTGAATGAGAAAGAATTGTTAAATCGTCCTGTCAGACTTGATTTAGCTCGTGAAAGGGGTGCATATACCCCAAACAGCAGCAACTGGAGCAACTCATTCCAGAAGGGCGGAAGAGCTCAGTCTCACACAATATTTGTCAAGGGTCTCGATACATCTCTAGGAGAAGATGAGATAAGAAGTGGCCTGGAAGATCATTTTAGTTGTGGAGAGATTACAAGGATATCAATTCCAAAAGATTATGACACTGGTGCTTTAAAGGGGTTTGCATACATGGATTTCAAGGATGCTGATGGCTTCAACCAAGCACTAGAACTCAACGGAAGTGAGCTTGGAGGTTATAGCTTGACAGTGGATGAAGCAAAACCTCGAGGTGATAACCTAGGCACAGGTGGGGGTCGAGGTGGTGGTGGAAGGAGTGGGGGTCGAGGTGGTGGAAGGAGTGGGGGTCGAGGTGGTGGAAGGAGCTGGGGAAGTGATGGTGGTGGTCAATTTGGTGGAAGGCGTGGAGGTGGCAGAGGCAGTCGTGGAAGGGGCGGCAGCAGGGGCCGTGGAACCCCGAATAAACCAAGCTTTATTGCTGAAGGCACAGGGACGAAGACCACTTTTGCTGATGATGATTAG 2295 0.441 MGKSSKKSAPKVDAAPAVVPPSKSAKNGKREAEDELEKQVSTKKQKRDEVAEKKKKEAKLQKNKKENSSDDFSSDSEEDKKPAVKPAAPSKTQPAKNGTLTMPTYKGKQVGSSSSSGSSDDDSDDNEAKNSKVTAKSKVASASGKNGNVATKKKVESSDSSDTDSSSEEESDERTKVAPFSKKLPNAAAKKVESSSETSDSESESSSDEDDVAKSSKKLPDAGKSIPAKKIESSDDTASDSSSDEDDGTQISLSSKKLPASTAVSKKKVESSDSSDVESSESSDKDNHIKRAVTAVPKPSATPKKVESSDSSGSDSSSSDEDNKNKNGVKTASSLKLSKTFEKNSKSSDSSDETGSDEEEESSDSDSEDGKKTAKVPKANIKAAAGVKTAKKESSESSSEDDSSEDEGKMDIDEDGSSEETNEEPQKKKTKALPLKALKESSNSSDSSEDSEEEIEEKPSRTPQKNAMDVEMVNAASMKSNGKKVPKTPGTPKEQNATSKTLFVGNLAFKVERADVENFFKECGEVVDVRLAVDDDGRFKGFGHVEFASAEAAQNALELNEKELLNRPVRLDLARERGAYTPNSSNWSNSFQKGGRAQSHTIFVKGLDTSLGEDEIRSGLEDHFSCGEITRISIPKDYDTGALKGFAYMDFKDADGFNQALELNGSELGGYSLTVDEAKPRGDNLGTGGGRGGGGRSGGRGGGRSGGRGGGRSWGSDGGGQFGGRRGGGRGSRGRGGSRGRGTPNKPSFIAEGTGTKTTFADDD 764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0072 764 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 598 733 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 399 420 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 269 292 - -
Glsi05g0072 764 FunFam Nucleolin 2 474 584 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 1 468 - -
Glsi05g0072 764 Coils Coil 29 71 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 26 85 - -
Glsi05g0072 764 Gene3D - 585 713 IPR012677 -
Glsi05g0072 764 SUPERFAMILY RNA-binding domain, RBD 594 711 IPR035979 GO:0003676
Glsi05g0072 764 SUPERFAMILY RNA-binding domain, RBD 491 595 IPR035979 GO:0003676
Glsi05g0072 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 600 680 IPR000504 GO:0003723
Glsi05g0072 764 CDD RRM1_NUCLs 501 577 IPR034349 -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 674 764 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 133 154 - -
Glsi05g0072 764 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 602 673 IPR000504 GO:0003723
Glsi05g0072 764 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 502 569 IPR000504 GO:0003723
Glsi05g0072 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 500 576 IPR000504 GO:0003723
Glsi05g0072 764 MobiDBLite consensus disorder prediction 421 435 - -
Glsi05g0072 764 CDD RRM2_NUCLs 601 678 IPR034350 -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 92 119 - -
Glsi05g0072 764 Gene3D - 439 584 IPR012677 -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 208 237 - -
Glsi05g0072 764 MobiDBLite consensus disorder prediction 244 268 - -
Glsi05g0072 764 SMART rrm1_1 501 572 IPR000504 GO:0003723
Glsi05g0072 764 SMART rrm1_1 601 676 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0072 Glsi-ChrGlsi05 25607030 25614940 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0072 463 668 Eukaryotic Initiation Factors Gene Family AT4G34110 26.761 2.11e-12 68.6