Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0067 ATGGAAGTCTTCCAATTTTCCCTTTTTTCTTGTGGAAAAGAAATATGGCATATTGTCCTACAAGCATCCAAGGCCGCTAGATACAAGAGTAGCTCGGCTATGGCTGCTTCCAAGGCGATAATGGCTTCCTTAACCCACCAGCGTTCAATAACATGCGCCGCTTCGGCACCCCCATCTTGTCCTTCACGGCTAGTGGCCCAACCACCCGACCTTATCAAGTGGGTAAGAAATAGAGGTGGGTTCGTGCACCGGGCGGTGAATATAGCACAAGATGACTCCAAAGGTCTGGGACTTGTGGCTTCAGAAGAAATTCCAAGAGGGAGTGATCTTATTGTTCTTCCAGACCACGTACCGTTGAGGATTGAGTCTCCTGAAACGGACCATGAAGATGGGCTTGAATCTGTGCTTGTTAATTTGGCTCGTCATGTTCCTAAGGAACTATGGGCTATGAAGCTGGGTCTGAAGCTTTTGCAAGAGCGAACCAAAGTTGGTTCATTTTGGTGGCCATATATCAGCAATCTCCCAGAAATGTACAGTGTGCCTATCTTCTTTCAAGGGGAGGATATAAAGAACTTGCAGTATGCTCCACTTCTTTACCAGGTTAACAAACGATGTCGCTTTCTTCTCAATTTTGAGCAAGAAGTCAAGTTTGCCCTTGACACTCTGAAACCAGATAAGCATCCTTTTGGTGGCCAAGAAGTAGATGCATCTTCTCTTGGATGGGCAATGTCAGCAGTCTCATCTAGGGCATTCCGGTTATATGGTAGTAGGCGTCTAGATGGGACCCACATTGACATACCCATGATGCTTCCTCTTATTGATATGTGCAACCATAGTTTCAATCCAAATGCCCAAATTGTTCAAGAACAAGATACTGGTAACATGAAGATGCAAGTGAAGGTTGTGGCTGACGCAGAAATCAAACAAGATGATCCTTTATTACTTAACTATGGCTGTTTAAGCAATGATTTTTTTCTTCTTGATTATGGATTTGTGATACCCTCAAATCCGTATGACTGTATTGAGCTCAAATATGATGGTGCTTTTTTGGATGCTGCAAGCATGGCAGCTGGAGTTTCTTTTCACAACTTCTCGGCACCAGCTCCATGGCAGGAACAAATTTTATCTCAGTTAAATCTAGCTGGAGAAGCTCCTGATCTCAAGGTAAGCTTAGGTGGTCCAGAAATAGTAGAGGGCCGCCTGTTGGCAGCATTGAGGGTACTTCTTGCAAGTGATATGGAGACTCTGCAGAACTATGACCTCAACACTCTCAAGTCTCTAGCTGCCGAAGCTCCTCTTGGTATTGCAAATGAAGTGGCTGCTTTACGAACCGCAATTGCTCTATGTGTCATTGCACTGGGACACTTCCCCACCAAAATAATGGATGATGAATCACTTTTGAAACATTGTGCTTCAGGGTCAACTGAGCTAGCAATCCAGTTCAGGATCCAAAAGAAATCTGTGATTATAGATGTGATGAGAGATCTCACGAGGAGGGTAAAGCTTCTCTCATCAAAGAAGAGAAGTCACGACTGA 1536 0.444 MEVFQFSLFSCGKEIWHIVLQASKAARYKSSSAMAASKAIMASLTHQRSITCAASAPPSCPSRLVAQPPDLIKWVRNRGGFVHRAVNIAQDDSKGLGLVASEEIPRGSDLIVLPDHVPLRIESPETDHEDGLESVLVNLARHVPKELWAMKLGLKLLQERTKVGSFWWPYISNLPEMYSVPIFFQGEDIKNLQYAPLLYQVNKRCRFLLNFEQEVKFALDTLKPDKHPFGGQEVDASSLGWAMSAVSSRAFRLYGSRRLDGTHIDIPMMLPLIDMCNHSFNPNAQIVQEQDTGNMKMQVKVVADAEIKQDDPLLLNYGCLSNDFFLLDYGFVIPSNPYDCIELKYDGAFLDAASMAAGVSFHNFSAPAPWQEQILSQLNLAGEAPDLKVSLGGPEIVEGRLLAALRVLLASDMETLQNYDLNTLKSLAAEAPLGIANEVAALRTAIALCVIALGHFPTKIMDDESLLKHCASGSTELAIQFRIQKKSVIIDVMRDLTRRVKLLSSKKRSHD 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0067 511 Gene3D - 359 507 IPR036464 -
Glsi05g0067 511 Pfam SET domain 95 318 IPR001214 GO:0005515
Glsi05g0067 511 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 475 - -
Glsi05g0067 511 SUPERFAMILY SET domain 69 336 IPR046341 -
Glsi05g0067 511 FunFam SET domain containing protein 354 507 - -
Glsi05g0067 511 Gene3D set domain protein methyltransferase, domain 1 13 331 - -
Glsi05g0067 511 SMART set_7 84 324 IPR001214 GO:0005515
Glsi05g0067 511 ProSiteProfiles SET domain profile. 84 318 IPR001214 GO:0005515
Glsi05g0067 511 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 328 506 IPR036464 -
Glsi05g0067 511 CDD SET_LSMT 85 332 - -
Glsi05g0067 511 Pfam Rubisco LSMT substrate-binding 366 488 IPR015353 -
Glsi05g0067 511 FunFam Histone-lysine N-methyltransferase setd3 36 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0067 Glsi-ChrGlsi05 24393923 24400606 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Glsi05g0067 SET 3.3e-12 No_clan