Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0054 ATGTACTTGAGGATAATACAGTGCAGAGATCGAAGATGGGGTTTCTTGTTTCAGCCAACCAAATTATTCATTATGCGAAGAGGCCGTGATTATGCATGCTTTCAATCTTTGTGCCCTAAGAGCACAGTGAAAGAATATTCTTCACCTGGTGGTATCATCAGAAGACATATGTTAGGTTCATTTTCATCTGGTCTGAATGGAAGGTCTAGTTTATGTTTGAAAAGTACTCAGTTATGTGTCTATAGTTCTGAAAGTGATGGAAGTAACGCAAGTGAGGATGAGCATGTAAATGCAAATGATGAAGCTAACTTTGATAAGGGAAAGAATTGGCAAGAGAAGTCTAGGGAAGATGTCAAACTCTGTAATGCACATGCACGCCTTGGAGAACAGGATCAGCAGGAATGGCTTAATAATGAGAAGCTTGCTGTAGAAAATAAAAAGAGAGAATCACCTTTTTTGACAAGAAGGGAGAAGTTCAAAAATGAGTTTCTGAGAAGGATTATTCCATGGGAGAAAATAAGCATTTCATGGGACACATTTCCTTACTACATTCCTGAGCATACAAAACATCTTTTGGTGGAGTGTGCTGCTTCCCATTTGAAACATAGGAAGTTCGCTTCATCTTATGGAGCTCGTCTCACATCTTCAAGTTGGAGAATATTGCTTCAGAGCATTCCTGGTACTGAGCTCTATCGGGAGAGATTAGTTAGAGCACTTGCACGCGATTTACAAGTTCCTTTGTTGGTGCTTGATAGCAACATCTTTGCTCCTTATGATGTAGATGATGAATTATCATCAGACTGTGAATCTGATGATGATAATGCAGAGTCTGGGGAGGAGGAATCGCTGGAATCAGAGGATGAGAATGATAATGATGCAAGCAATGAAGAAGAATGGACTAGCAGTACTGAGGCAAAGACAGATGGTAGTGATAATGAAGAACATGATACACTGGCAACTGCTGAAGCAGCCCTTAAGAAGGTTAAAGCTGCTGTTCAGAAACTTGTTCCCTACAACATTGAAGACTTTGAAAAGAGATCAGTTCAAGAATTTGAGAGTTCTGAGTCATCCAAGTCTGAGGATGTCAAGCCTACAGATAAATCTGGATGCCAGCTAAAGAAAGGTGACCGTGTGAAATACACTGGGCCATCTGTTCGAGTTGAAGCTGATAATAGGTCCTTGTCAAATGGTCAGCGAGGAGAGGTGTATGAAGTGAATGGAGATCAGGTTGCTGTGTTCTTGGATATTGGTGAAGATATTGCAAAGGAGGATGAGGTGGAGAAACTAAACGATCAACATACAATGCCACCAATTTATTGGATACATGTCAAGGACATTGAGCATGATGTTGATGCTCAAGCACAGGATTGCTACGTAGCACTGAAGGCTCTATGTGAGGTTTTGCAATCCAAACAACCTCTTATCGTCTATTTTCCAGACAGCTCACAATGGTTGCATAGATCAGTTCCTAAGTCAAATCGAAATGAGCTTTTTCAGAAGGTCCAAGAAATGTTCAACAAATTATCTGGCCCGATTGTGTTGATCTGTGGGCAAAACAAAGTTCAATCAGGATCAAAGGAGAAAGAAAAATTTACAATGATACTTCCAAACTTTGGACGTGTTGCTAAATTGCCTCTTTCTCTCAAGCGATTGACTGAGGGATTGAAAGGGAGAAAGAGATTGAATGATGATGAATTTCACAAGCTCTTCACAAATGTCATGTTTATTAATCCACCCAAGGAGGAGGATCTTCTTGAAACATTCAAAAAACAACTTGATGAAGACAGGAGAATTGTGATTTCACGTAGCAATTTGAATGAACTTCATAAGGTTCTTGAAGAACATGAGCTATTATGCATGGATCTCTTGCATATAAATACTGATGGTATCATTTTGACAAAACAAAAAGCTGAAAAAGTGGTAGGTTGGGCAAAAAATTATTATTTGTCATCTTGCCCCCTTCCTTCTGTTAAAGGAGAAAGATTGTGCCTGCCTCGTGAAAGTATTGAAATTGCAATATCAAGATTGAAGGAGCAAGATACTAGATTGAGGAAGCCCTCTCAAAGTCTGAAGAATCTTGCAAAGGATGAGTATGAGAGCAACTTCATTTCAGCTGTAGTACCTCCTGGTGAAATTGGGGTGAAGTTTGATGACATAGGTGCTCTTGAAGATGTGAAGAAGGCACTAAATGAACTTGTCATTCTTCCAATGAGAAGGCCAGAGCTTTTCTCTCGTGGAAACTTGTTGCGGCCTTGCAAAGGAATATTACTTTTCGGTCCGCCTGGGACTGGGAAAACTCTCCTTGCAAAGGCACTTGCAACAGAAGCCGGTGCTAATTTTATCAGCATAACTGGTTCAACTCTTACATCGAAGTGGTTTGGAGATGCTGAAAAACTTACCAAAGCCCTTTTCTCCTTTGCCAGCAAGCTTGCTCCTGTCATTATATTTGTGGATGAAGTTGACAGTTTGCTAGGCGCTCGAGGTGGTTCTTTTGAGCATGAGGCCACTAGAAGAATGAGGAATGAGTTCATGGCAGCTTGGGACGGATTGCGGTCAAAAGAAAGCCAAAGAATCCTCATTCTTGGTGCAACAAACAGGCCATTTGACCTTGATGATGCTGTTATCCGTCGCTTACCAAGAAGGATATATGTGGATTTACCTGATGCTGAAAATCGAATGAAGATTTTGAGAATATTTCTTGCACAAGAAAATCTGGATCCTGAATTCCACTTTGATAAACTTGCTTACTTAACTGATGGATATTCTGGCAGTGATTTGAAGAACCTCTGTATTGCTGCAGCATATAGACCTGTTCAAGAGCTCTTGGAAGATGAAAAGAAGAGAGGCATTGGTGATTCAACTGTGTCATTAAGGCCACTTAAGTTGGATGATTTTTTTCAGTCAAAATCCAAGGTTGGCCCATCAGTTGCCTATGATGCAGCAAGCATGAATGAATTGAGGAAGTGGAATGAGATGTATGGAGAAGGTGGAAGTAGGAGAAGATCACCATTTGGATTTGGGAGCTGA 3027 0.4054 MYLRIIQCRDRRWGFLFQPTKLFIMRRGRDYACFQSLCPKSTVKEYSSPGGIIRRHMLGSFSSGLNGRSSLCLKSTQLCVYSSESDGSNASEDEHVNANDEANFDKGKNWQEKSREDVKLCNAHARLGEQDQQEWLNNEKLAVENKKRESPFLTRREKFKNEFLRRIIPWEKISISWDTFPYYIPEHTKHLLVECAASHLKHRKFASSYGARLTSSSWRILLQSIPGTELYRERLVRALARDLQVPLLVLDSNIFAPYDVDDELSSDCESDDDNAESGEEESLESEDENDNDASNEEEWTSSTEAKTDGSDNEEHDTLATAEAALKKVKAAVQKLVPYNIEDFEKRSVQEFESSESSKSEDVKPTDKSGCQLKKGDRVKYTGPSVRVEADNRSLSNGQRGEVYEVNGDQVAVFLDIGEDIAKEDEVEKLNDQHTMPPIYWIHVKDIEHDVDAQAQDCYVALKALCEVLQSKQPLIVYFPDSSQWLHRSVPKSNRNELFQKVQEMFNKLSGPIVLICGQNKVQSGSKEKEKFTMILPNFGRVAKLPLSLKRLTEGLKGRKRLNDDEFHKLFTNVMFINPPKEEDLLETFKKQLDEDRRIVISRSNLNELHKVLEEHELLCMDLLHINTDGIILTKQKAEKVVGWAKNYYLSSCPLPSVKGERLCLPRESIEIAISRLKEQDTRLRKPSQSLKNLAKDEYESNFISAVVPPGEIGVKFDDIGALEDVKKALNELVILPMRRPELFSRGNLLRPCKGILLFGPPGTGKTLLAKALATEAGANFISITGSTLTSKWFGDAEKLTKALFSFASKLAPVIIFVDEVDSLLGARGGSFEHEATRRMRNEFMAAWDGLRSKESQRILILGATNRPFDLDDAVIRRLPRRIYVDLPDAENRMKILRIFLAQENLDPEFHFDKLAYLTDGYSGSDLKNLCIAAAYRPVQELLEDEKKRGIGDSTVSLRPLKLDDFFQSKSKVGPSVAYDAASMNELRKWNEMYGEGGSRRRSPFGFGS 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0054 1008 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 713 935 IPR027417 -
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 86 110 - -
Glsi05g0054 1008 SMART AAA_5 751 888 IPR003593 GO:0016887
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 263 297 - -
Glsi05g0054 1008 Pfam AAA+ lid domain 911 943 IPR041569 -
Glsi05g0054 1008 Gene3D - 887 972 - -
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 299 315 - -
Glsi05g0054 1008 Pfam ATPase family associated with various cellular activities (AAA) 755 885 IPR003959 GO:0005524|GO:0016887
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 263 315 - -
Glsi05g0054 1008 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 713 889 - -
Glsi05g0054 1008 ProSitePatterns AAA-protein family signature. 858 877 IPR003960 GO:0005524|GO:0016887
Glsi05g0054 1008 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 157 1001 - -
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 88 110 - -
Glsi05g0054 1008 Gene3D - 714 990 IPR027417 -
Glsi05g0054 1008 MobiDBLite consensus disorder prediction 347 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0054 Glsi-ChrGlsi05 19101707 19201027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0054 714 961 Calmodulin-binding Proteins AT3G56690 37.450 5.53e-40 158