Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0053 ATGGTTGGAGATGCGTGGGAGGACATTGATCCAGATGAACTTTCATACGAGGAACTACTGGCATTGGGTGAAGTAGTTGGGACTGAGAGTAGAGGTCTTTCAACTGATAGTATTGCCTCCTTGCCTTCAGTTAACTACAAGACAGGAAGTGATCAACATGGAAGCAATGATTCGTGTGTCATTTGCCGGGTGGACTATGAGGATTCTGAGTCTTTGACAGTTCTTTCGTGCAAACATTTGTACCATCCTGAGTGCATCAACAATTGGTTGAAAATAAACAAGATTTGCCCTGTTTGCAGTGCTGAGGTATCTGTTTCTGGGAGTAACTTGTAG 333 0.4354 MVGDAWEDIDPDELSYEELLALGEVVGTESRGLSTDSIASLPSVNYKTGSDQHGSNDSCVICRVDYEDSESLTVLSCKHLYHPECINNWLKINKICPVCSAEVSVSGSNL 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0053 110 ProSiteProfiles Zinc finger RING-type profile. 59 100 IPR001841 -
Glsi05g0053 110 SMART ring_2 59 99 IPR001841 -
Glsi05g0053 110 FunFam E3 ubiquitin ligase BIG BROTHER-related 25 106 - -
Glsi05g0053 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 24 105 IPR013083 -
Glsi05g0053 110 SUPERFAMILY RING/U-box 50 105 - -
Glsi05g0053 110 Pfam Ring finger domain 57 99 IPR001841 -
Glsi05g0053 110 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 4 108 IPR043312 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0053 Glsi-ChrGlsi05 18487286 18489556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0053 5 103 C3H Transcription Factor Family AT3G63530 53.922 4.25e-34 116