Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0050 ATGGGGCGCGGAAAGATTGAGATCAAGAGAATTCAGAACACCACCACCAGGCAGGTCACCTTCTCCAAACGCAGAGCAGGCCTAGTGAAGAAGACTCATGAGCTTTCTGTCCTCTGCGATGCCCAAATCGGCCTCATCATCTTCTCAAGCACTGGGAAGATGTTTCAGTACTGCAGTGAACCTTTGAGAATGGAGCAGATGATCGAAAGATATCAGAGAGCTACAGGAGCTCGCATACCTGAGCATGATAGCCGGGAAGATTTATTCAATGAAATGGCAATGCTGAGTCAGGAGACGCTCCGTCTGGAACTGGGAATTCAAAGGTATGTTGGAGAGGACCTGAGCTCTTTACAGTACGAGGAATTGACTAAAATTGAACAAGAACTTGAGAACTCTGTTACCAAGGTGCGAAACCGTAAGAATGATCTATTGCAGCAGCAGTTGGATAATCTGAGAAGGAAGGAACACCGAGCAGTGCTGGAGTTTCAGAAGGCAGCTGTGGAAGTGAAACCAGTAGAGCATCAGCAAATGATGGAACAGTTCCCATTCTATGAAGAGCAACCTGCTGGTAGCATCCTTCAACTTGCCCCTGTGCTTCCTCATCTTCACCCCTATCTTCAGCTGGCGCAGCCCAATATTCAAGACCCAGTCAAGGATCAGGAACCCCAACAATGGTTACATATAATAACTCTCTCTCTGCATATTGCACTGTAG 714 0.472 MGRGKIEIKRIQNTTTRQVTFSKRRAGLVKKTHELSVLCDAQIGLIIFSSTGKMFQYCSEPLRMEQMIERYQRATGARIPEHDSREDLFNEMAMLSQETLRLELGIQRYVGEDLSSLQYEELTKIEQELENSVTKVRNRKNDLLQQQLDNLRRKEHRAVLEFQKAAVEVKPVEHQQMMEQFPFYEEQPAGSILQLAPVLPHLHPYLQLAQPNIQDPVKDQEPQQWLHIITLSLHIAL 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0050 237 Coils Coil 119 161 - -
Glsi05g0050 237 Gene3D - 14 95 IPR036879 GO:0003677|GO:0046983
Glsi05g0050 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Glsi05g0050 237 ProSiteProfiles K-box domain profile. 85 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Glsi05g0050 237 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Glsi05g0050 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Glsi05g0050 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 176 - -
Glsi05g0050 237 Pfam K-box region 81 158 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0050 Glsi-ChrGlsi05 18062658 18064945 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0050 1 217 MADS-box Gene Family AT5G23260 50.403 3.45e-73 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Glsi05g0050 K-box 4e-17 No_clan