Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0038 ATGTTATTGGCCTCTATGACTGCGAGGATTCCTCTTTGTGCAGAGCAGATTGTGAAACAATGGACTTACCTGGTGGTGATGGAAGTGGTAGTGGCTCCCTTGGCTGTTGCTATCCACTCTTGGACCACAGCATATGGCATATTGGAGAAGGGTTTTCAGTGTTTTCTTAGTATGGATGCAGGGGATTTTCTAGTTGGGCTGTTTTGCGAGGGTCAAATTCAGGAAAGCGTGAGGTCAAATTGGAATGGGCTATTCCTAATCCTAAGAACTCCTCCAAGCCAGTTTGTGCAAGGAATGCATGCATGGTCAATGCTACATCAATTGAGGGAGGGGCAAGGTGTGTCTGTCAGGATGGATATGTTGGTGATGGATTTGCTAACGGGACAGGATGCTTGCAGTCCATTTTCACGCAGAGAGAGAGAGTGTGTGAGAGTAAGAAGAGAGATGGATTTGGACCAGTGGATCGCGAAGGTTAAGGAAGGGCAGCATCTTCTGGAAGACGAGCTCCAGCTTCTTTGCGAATATGTAAAAGAGATCCTTATTGAGGAGTCCAATGTGCAGCCTGTCAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGCCAATTCCATGATCTAATGAAACTTTTCCAGACAGGGGGTCATGTCCCTGAGACAAATTATATCTTTATGGGAGACTTTGTTGATAGAGGGTACAATAGTCTTGAAGTTTTCACCATCCTTTTACTTCTAAAAGCTAGATACCCAGCAAATATTACCCTTTTACGTGGAAACCATGAAAGTAGACAACTAACCCAGGTCTATGGATTTTATGATGAATGCCAGAGGAAGTATGGAAATGCTAATGCTTGGCGGTATTGTACAGATGTTTTCGACTATCTAACACTTTCTGCAATAATAGATGGAACTGTACTTTGTGTTCATGGGGGCCTTTCTCCTGACATTCGTACAATTGATCAGATAAGGATCATTGAACGGAACTGTGAAATTCCTCATGAGGGACCATTTTGTGATCTAATGTGGAGTGATCCTGAAGATATTGAAACATGGGCAGTCAGTCCCCGTGGAGCAGGTTGGCTTTTTGGATCGAGGGTCACCTCTGAGTTCAATCACATAAATAATCTTGATCTTGTTTGTCGAGCACATCAACTTGTGCAAGAAGGCCTTAAGTATATGTTCCAAGATAAAGGCCTGGTAACTGTATGGTCTGCACCTAATTACTGTTACCGATGTGGAAATGTAGCTTCTATTCTGAGTTTCAATGAAAATATGGAGAGAGAAGTTAAATTTTTCACCGAGACAGAGGAGAACAACCAGATGAGAGGGCCCAGGACAGGCGTTCCATATTTCTTGTAA 1356 0.4314 MLLASMTARIPLCAEQIVKQWTYLVVMEVVVAPLAVAIHSWTTAYGILEKGFQCFLSMDAGDFLVGLFCEGQIQESVRSNWNGLFLILRTPPSQFVQGMHAWSMLHQLREGQGVSVRMDMLVMDLLTGQDACSPFSRRERECVRVRREMDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRIIERNCEIPHEGPFCDLMWSDPEDIETWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVPYFL 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0038 451 Gene3D - 143 451 IPR029052 -
Glsi05g0038 451 CDD MPP_PP2A_PP4_PP6 150 433 - -
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 374 394 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 254 278 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 289 315 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 221 248 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 318 345 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 192 219 IPR006186 GO:0016787
Glsi05g0038 451 PRINTS Serine/threonine phosphatase family signature 397 413 IPR006186 GO:0016787
Glsi05g0038 451 ProSitePatterns Serine/threonine specific protein phosphatases signature. 255 260 IPR006186 GO:0016787
Glsi05g0038 451 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 149 451 IPR047129 GO:0004722
Glsi05g0038 451 SMART pp2a_7 164 435 IPR006186 GO:0016787
Glsi05g0038 451 FunFam Serine/threonine-protein phosphatase 149 451 - -
Glsi05g0038 451 Pfam Calcineurin-like phosphoesterase 192 383 IPR004843 GO:0016787
Glsi05g0038 451 SUPERFAMILY Metallo-dependent phosphatases 148 434 IPR029052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0038 Glsi-ChrGlsi05 13065714 13084663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0038 191 369 Calmodulin-binding Proteins AT5G63870 37.500 2.56e-28 112