Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0027 ATGGAGAACGACCCGGTTCAGCTTTTTCGTTCTGTTGCTCTAACACTTCTCTTTTTGATGACCATTTTGTTTACTCTAACCGAAGAAGTCGCATTTTCGTCCATCAAGACAGATGCACAGGCTCTGCTTATGTTCAAAAAGATGATTCAGAAGGACCCTAACAGAGTTTTATCAGGGTGGCAGTTCAACAGGGATCCATGCACCTGGTATGGAGTTTCCTGCACCGGAAGACGAGTTACTCAGCTTGATCTTAGCGATAACAATCTTGCTGGGAATTCTCTCAATCCTCTGTCTTCTTTAGATATGTTGTCTGTTCTAAATTTGCATTTGAACTCATTTCCTGTAAATTCTACTTCTTTGCTTCAGCTTCCTTATAGTTTGACACTGCTTGATCTATCCTTTTCTGGAGTTTCAGGTCTTCTCCCTGAGAACTTTTTCTCTAGGTGTCCAAATCTTGTCGTTGTGAATCTTTCTTACAACAACTTGACAGGTCCTATACCTGAAAATTTCTTGCAGAATTCCGATAAACTGCAGTCTCTTGATCTCTCTTCTAACAATTTGACAGGGTCAATTTCAAGCTTGAAAATTGAGCGCAATTCCTTGTTGCTACTTGATCTTTCAGGAAACCGTTTATCAGACTCGATTCCATTCTCCTTGTCAAACTGCACCAGTCTTAAAACTTTAAATTTAGGCAATAATTTGATTACAGGGGAAATCCCGAAAGCGTTGGGTCAGCTAAACAAGCTAGAAATATTGGATCTTTCTCATAATCAAATTACTGGCTGGATCCCTTTTGAGTTGGGAAATGTATGTTCTTACCTTAAAGAACTTAGACTTTCTTTCAACAACATTTCAGGTTCAATTCCACCTGCCTTCTCTTCTTGCTCTCTGCTGCAAATTCTTGACATATCTAACAACAATATGTCAGGGTCCTTGCCAATTTCCATCTTTCAAAACCTTGGATCAATTCAGGAACTTCATTTAGGAAATAATGCTATCTCAGGATCTTTTCCTTCATCAATATCTTACTGCAAAAATTTGAGGATTCTGGACTTGAGCTCCAATAAGATATCTGGATTTATTCCCCAAGATATATGTCCAGGGGCAGCCTCCCTTGAGGAGCTGAGAATGCCAGATAATCTCATTGCAGGAGAAATCCCAGCTGAACTGTCAAAATGTTCACAACTGAAGACTATTGATTTTAGTCTAAACTATCTCAATGGGTCAATTCCAGCACAACTTGGACAACTCGCAAATCTTCAGCAACTGATAGCATGGTTCAATGGGTTGGAAGGAAAAATCCCACCGGAATTAGGTAAATGCAGAAATCTGAAGGATATTATACTAAATAATAACCGTCTGACTGGTGAGATTCCTGTTGAGTTGTTTAATTGCAGCAATCTTGAATGGATTTCGCTGACAAGCAATGGACTCACAGGTGAAGTACCGCATGAATTTGGCCTGTTAACGCGATTAGCAGTTTTGCAGCTTGGAAACAACAGCTTGACTGGGGAGATACCAGCAGAGCTAGCAAATTGTAGCAGTTTGGTTTGGTTGGACTTGAACAGTAATAAGCTCACAGGAGAGATCCCCCCTCGACTTGGCAGGCAGCTAGGAGCAAAATCGTTATTTGGCATTCTCTCAGGAAACACATTGGTGTTTGTACGAAATGTTGGAAACTCATGTAAAGGAGTTGGGGGTTTGTTAGAATTTTCCGGTATTCGCCCTGAAAGACTTTTGCAGGTACCAACATTGAGGACATGTGATTTCACAAGATTGTACTCTGGTCCAGTCCTGAGCATGTTTACCAAGTACCAGACTTTGGAATATCTAGACCTTTCCTACAATCAGCTTCGTGGAAAAATCCCAGAAGAATTTGGGGACATGGTGGCTCTACAGGTTCTTGAATTATCTCACAACCAGCTATCTGGAGAGATTCCATCATCACTTGGCCAGCTCAAAAATTTAGGTGTCTTTGATGCATCACATAATAGGTTGCAGGGTCATATCCCAGACTCATTCTCTAATCTATCATTCTTGGTGCAAATTGATCTGTCTAACAATGAGTTAACTGGGCAAATTCCATCAAGAGGACAACTAAGTACACTTCCAGCCAGCCAGTATGCAAACAACCCGGGTCTTTGTGGTGTTCCATTGCCTGAATGCCAGAATGACAACAGCCAACCCTCAACAAATCCCAGTGGGGATGATCGCAAAGGAGGTCATAGGCCAGCAACTGCATCATGGGCAAATAGCATTGTCTTGGGAATTCTCATTTCCATTGCTTCTATATGCATCTTAATTGTGTGGGCAATTGCTATGCGTGCTAGGAGGAAGGAAGCTGAGGAAGTCAAGATGCTTAGTAGCTTGCAAGCATCTCATGCTGCCACAACATGGAAAATTGACAAAGAGAAAGAGCCCTTAAGCATTAATGTGGCAACATTTCAGAGACAGCTGAGGAAGCTCAAGTTCTCACAACTGATTGAAGCAACCAACGGCTTCTCAGCAGCAAGCCTGATTGGATGTGGTGGGTTTGGAGAAGTTTTCAGGGCTACACTCAAGGATGGGTCAAGTGTTGCAATCAAAAAGCTCATTCGACTGAGCTGCCAGGGTGATAGAGAATTCATGGCTGAGATGGAAACCTTGGGGAAGATCAAGCATAAAAATCTAGTGCCCTTATTGGGATATTGTAAAGTAGGTGAAGAGAGGCTTCTTGTTTATGAGTACATGGAATATGGAAGCCTAGAAGAAATGCTCCATGGGAGAACAAAGACACGAGATCGGCGAATTTTAACATGGGAAGAAAGGAAAAAAATTGCGAGAGGTGCTGCCAAAGGACTTTGTTTTCTACACCACAATTGCATCCCACACATAATACACCGAGACATGAAATCAAGCAATGTTCTACTTGACCATGAAATGGACGCCAGGGTTTCAGATTTTGGAATGGCAAGACTAATAAGCGCCCTTGATACCCATCTAAGTGTTAGCACACTAGCAGGAACACCTGGATATGTGCCACCAGAGTACTACCAAAGTTTTCGGTGCACTGCAAAGGGAGATGTCTACTCATTTGGAGTTGTCATGTTGGAACTCCTTACTGGGAAACGACCAACTGATAAGGAAGACTTTGGTGACACTAACTTGGTGGGATGGGCCAAGATGAAGGTTCGTGAAGGGAAACAAATGGAAGTAATTGATCCTGAGTTACTTTTGGTGACTAAAGGAACGGATGAAGCAGAAGTTAAAGAAGTGAAAGAGATGATACGATATTTAGAGATAACATTACAGTGTGTTGATGACTTTCCTTCCAAAAGGCCAAATATGTTGCAGGTAGTGGCCATGCTGAGAGAGCTGATGCCTGGATCAGCTGATGGAAGCAGCAACAGTGCTTGA 3396 0.4205 MENDPVQLFRSVALTLLFLMTILFTLTEEVAFSSIKTDAQALLMFKKMIQKDPNRVLSGWQFNRDPCTWYGVSCTGRRVTQLDLSDNNLAGNSLNPLSSLDMLSVLNLHLNSFPVNSTSLLQLPYSLTLLDLSFSGVSGLLPENFFSRCPNLVVVNLSYNNLTGPIPENFLQNSDKLQSLDLSSNNLTGSISSLKIERNSLLLLDLSGNRLSDSIPFSLSNCTSLKTLNLGNNLITGEIPKALGQLNKLEILDLSHNQITGWIPFELGNVCSYLKELRLSFNNISGSIPPAFSSCSLLQILDISNNNMSGSLPISIFQNLGSIQELHLGNNAISGSFPSSISYCKNLRILDLSSNKISGFIPQDICPGAASLEELRMPDNLIAGEIPAELSKCSQLKTIDFSLNYLNGSIPAQLGQLANLQQLIAWFNGLEGKIPPELGKCRNLKDIILNNNRLTGEIPVELFNCSNLEWISLTSNGLTGEVPHEFGLLTRLAVLQLGNNSLTGEIPAELANCSSLVWLDLNSNKLTGEIPPRLGRQLGAKSLFGILSGNTLVFVRNVGNSCKGVGGLLEFSGIRPERLLQVPTLRTCDFTRLYSGPVLSMFTKYQTLEYLDLSYNQLRGKIPEEFGDMVALQVLELSHNQLSGEIPSSLGQLKNLGVFDASHNRLQGHIPDSFSNLSFLVQIDLSNNELTGQIPSRGQLSTLPASQYANNPGLCGVPLPECQNDNSQPSTNPSGDDRKGGHRPATASWANSIVLGILISIASICILIVWAIAMRARRKEAEEVKMLSSLQASHAATTWKIDKEKEPLSINVATFQRQLRKLKFSQLIEATNGFSAASLIGCGGFGEVFRATLKDGSSVAIKKLIRLSCQGDREFMAEMETLGKIKHKNLVPLLGYCKVGEERLLVYEYMEYGSLEEMLHGRTKTRDRRILTWEERKKIARGAAKGLCFLHHNCIPHIIHRDMKSSNVLLDHEMDARVSDFGMARLISALDTHLSVSTLAGTPGYVPPEYYQSFRCTAKGDVYSFGVVMLELLTGKRPTDKEDFGDTNLVGWAKMKVREGKQMEVIDPELLLVTKGTDEAEVKEVKEMIRYLEITLQCVDDFPSKRPNMLQVVAMLRELMPGSADGSSNSA 1131
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0027 1131 MobiDBLite consensus disorder prediction 719 743 - -
Glsi05g0027 1131 Gene3D Ribonuclease Inhibitor 37 145 IPR032675 -
Glsi05g0027 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 169 370 - -
Glsi05g0027 1131 ProSitePatterns Protein kinases ATP-binding region signature. 840 863 IPR017441 GO:0005524
Glsi05g0027 1131 FunFam serine/threonine-protein kinase BRI1-like 2 795 909 - -
Glsi05g0027 1131 ProSiteProfiles Leucine-rich repeat profile. 248 269 IPR001611 GO:0005515
Glsi05g0027 1131 Gene3D Ribonuclease Inhibitor 166 722 IPR032675 -
Glsi05g0027 1131 Pfam Leucine rich repeat 203 259 IPR001611 GO:0005515
Glsi05g0027 1131 Pfam Leucine rich repeat 466 526 IPR001611 GO:0005515
Glsi05g0027 1131 Pfam Leucine rich repeat 600 642 IPR001611 GO:0005515
Glsi05g0027 1131 Pfam Leucine rich repeat 273 333 IPR001611 GO:0005515
Glsi05g0027 1131 Pfam Leucine rich repeat 126 187 IPR001611 GO:0005515
Glsi05g0027 1131 SUPERFAMILY L domain-like 37 313 - -
Glsi05g0027 1131 ProSiteProfiles Leucine-rich repeat profile. 176 198 IPR001611 GO:0005515
Glsi05g0027 1131 ProSiteProfiles Protein kinase domain profile. 834 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi05g0027 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 371 553 - -
Glsi05g0027 1131 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 266 1118 - -
Glsi05g0027 1131 Gene3D Phosphorylase Kinase; domain 1 792 909 - -
Glsi05g0027 1131 ProSitePatterns Serine/Threonine protein kinases active-site signature. 958 970 IPR008271 GO:0004672|GO:0006468
Glsi05g0027 1131 Pfam Brassinosteroid receptor island domain 544 603 IPR045381 -
Glsi05g0027 1131 PRINTS Leucine-rich repeat signature 177 190 - -
Glsi05g0027 1131 PRINTS Leucine-rich repeat signature 246 259 - -
Glsi05g0027 1131 CDD STKc_IRAK 840 1119 - -
Glsi05g0027 1131 SUPERFAMILY RNI-like 239 533 - -
Glsi05g0027 1131 ProSiteProfiles Leucine-rich repeat profile. 346 367 IPR001611 GO:0005515
Glsi05g0027 1131 Pfam Leucine rich repeat N-terminal domain 36 74 IPR013210 -
Glsi05g0027 1131 SMART LRR_typ_2 345 368 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 246 269 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 514 537 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 417 441 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 149 173 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 629 653 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 320 344 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 442 465 IPR003591 -
Glsi05g0027 1131 SMART LRR_typ_2 489 513 IPR003591 -
Glsi05g0027 1131 MobiDBLite consensus disorder prediction 721 735 - -
Glsi05g0027 1131 Gene3D Transferase(Phosphotransferase) domain 1 910 1127 - -
Glsi05g0027 1131 SMART LRR_sd22_2 174 196 - -
Glsi05g0027 1131 SMART LRR_sd22_2 653 679 - -
Glsi05g0027 1131 SMART LRR_sd22_2 344 359 - -
Glsi05g0027 1131 SMART LRR_sd22_2 246 267 - -
Glsi05g0027 1131 Gene3D - 547 603 - -
Glsi05g0027 1131 SUPERFAMILY L domain-like 572 719 - -
Glsi05g0027 1131 Pfam Leucine Rich repeat 343 358 IPR001611 GO:0005515
Glsi05g0027 1131 FunFam serine/threonine-protein kinase BRI1-like 2 910 1127 - -
Glsi05g0027 1131 Pfam Protein tyrosine and serine/threonine kinase 838 1115 IPR001245 GO:0004672|GO:0006468
Glsi05g0027 1131 FunFam serine/threonine-protein kinase BRI1-like 2 37 147 - -
Glsi05g0027 1131 SUPERFAMILY Protein kinase-like (PK-like) 815 1116 IPR011009 -
Glsi05g0027 1131 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 569 726 - -
Glsi05g0027 1131 SMART serkin_6 834 1120 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Glsi05g0027 Glsi-ChrGlsi05 9089231 9092626 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0027 42 1119 Receptor kinase-like Gene Family AT1G55610 49.330 0.0 1007
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Glsi05g0027 PK_Tyr_Ser-Thr 8e-44 CL0016