Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0025 ATGGGTAGTTGTGGAAGGGAAGGAGCAGTGAGGCAGTATATAAGATCGAAGGTTCCTCGTTTAAGATGGACCCCTGAACTGCATCGCTGCTTTGTCCATGCCATTGAGAGTCTTGGAGGTCATCACAAGGCTACGCCTAAGCTTGTTCTTCAGTTGATGGATGTCAAAGGGCTCACTATTTCACACGTCAAGAGCCATCTCCAGATGTACAGAAGCATGAGAGGTGGTGACCTGGGCAGACAAGATAGGACTTCCTCTCAACATAGAAAACACTCTTTTGAGGAACATGATGATGGGTGTGTTGATGAAGTGAATGATGTCGGTGTTCACCATTCTTCAAAACCCGTTGGAAAAGAATCTGGTTCCCACTTCAGCTACAGTAATCTATCCTCAAAAAGAGCTAGAATCGAGACGACGAGTTCCATCTCAGAGAGCCTGCAATGCAGCCAAAGAATATGTGAAGCAGTCCCAAATCCGTACTCCTTTTATGATTATCTGCAGGCAATGGCTGGGCATAAGGGAATAAAGGAGGTTTGTGCTGGTTCAAGATGGCAGACTCAACCCCGTTCGACAGCCTTCTCTCTGCTTCCAGATTTTGGCAACCTGAGTTCATTCAAATGTCCAAAGCAAGAATCTGAGTTTCTTCAGGTTAATGAATTAGTTAGCTGTAAGCCCACTTCACTGCCAATGAATGCAGTTGAGAACACTGAGAGGGCACATGCAGAAGACGAAGTAAGAGGGTGTGAGTTGTCATTATCTCTCTCATTGCTCAATCCCTCCTCTCAGAGAAGTAATGCTTCTTCAACCAGTGATATCAGTGAAGCAATCTCATCATGCCCTGCCTATAGTAATTATAAGGACTGCTCTAGTTCTTCCACTGGCAAAGATAGAATGAACTTAGATCTTTCTATTGCCCTATGTGGCAACTGA 930 0.4484 MGSCGREGAVRQYIRSKVPRLRWTPELHRCFVHAIESLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGGDLGRQDRTSSQHRKHSFEEHDDGCVDEVNDVGVHHSSKPVGKESGSHFSYSNLSSKRARIETTSSISESLQCSQRICEAVPNPYSFYDYLQAMAGHKGIKEVCAGSRWQTQPRSTAFSLLPDFGNLSSFKCPKQESEFLQVNELVSCKPTSLPMNAVENTERAHAEDEVRGCELSLSLSLLNPSSQRSNASSTSDISEAISSCPAYSNYKDCSSSSTGKDRMNLDLSIALCGN 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0025 309 MobiDBLite consensus disorder prediction 75 96 - -
Glsi05g0025 309 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Glsi05g0025 309 FunFam Myb family transcription factor 17 75 - -
Glsi05g0025 309 SUPERFAMILY Homeodomain-like 17 72 IPR009057 -
Glsi05g0025 309 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Glsi05g0025 309 Gene3D - 18 74 - -
Glsi05g0025 309 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Glsi05g0025 309 MobiDBLite consensus disorder prediction 76 96 - -
Glsi05g0025 309 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 7 114 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0025 Glsi-ChrGlsi05 6691345 6694680 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0025 1 80 G2-like Transcription Factor Family AT1G14600 70.588 2.12e-35 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Glsi05g0025 Myb_DNA-binding 3.8e-06 CL0123