Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi05g0002 ATGATCTTACAATCTGCTTCTGCGAGCTTTGACTTCTCGCAGATTTTCCCTTACGTTTGCCCATGTAATAACTTGGGTGTTATTAGCGGTTCAAGGGACCAAAGTTTTCTAACATTTCCTATATCTAGAAGAAGAAGGAAAGGATTGATTGCCAATTCTGGGTATCGAAAATTTCGAAGAAAATGGAGCTTTCGCCTGTGTGCAATGCCTACAGATGGTTCTAACCGAAATTGGAATGCGGAATTTTCAAATTCTACGAGACAGGGTGCAAAAAGTTTCGTGTTGAAGCGGATTTCTAGTGAATTGGAGGGGGATGAATTGTCGCAAGAATCGCCCATTCAAGTGAGTTCAAACTTTACCAATTTCCAAGAAGATCCTATTGTAGACAAGTTAAGAACCCAATTGGGAGTGATACACCCGATTCCGTCGCCGCCAATTAACCGCAACGTGGTTGGTTTATTTGTGTTCTTTTTCTTTGTTGGGGTTATTTTTGATAAATTGTGGACATCAAGGAGGAGGAGCAAAGTTGGTAGTGAAGACAGCCGACGTGGTGTGTGGCCACAGGTTCCGACCAGCTTTTCATTGTTTCTGGAGAAGGATTTGCAGAGAAAAGAGTCAGTTGAATGGGTGAACATGGTACTCGTAAAGTTATGGAAGGTCTATAGAGCTGGGATTGAAAATTGGATAATTGGCCTGCTTCAGCCTGTTATTGATAACTTAAAGAAACCTGATTATGTTCAGAGGGTTGAGATAAAGCAATTCTCATTGGGGGATGAGCCATTGTCAGTTAGAAATGTGGAGCGAAGGACTTCTCGCCGGGCCAATGATTTGCAGTACCAAATAGGCCTTAGGTATACTGGTGGTGCTCGAATGCTGCTGATGCTTTCACTAAAATTTGGCATAATTCCAATTGTCGTGCCTGTTGGTGTTCGAGATTTTGACATTGATGGTGAACTTTGGGTAAAATTACGACTAATACCAACAGAGCCTTGGGTGGGAGCTGTTTCATGGGCTTTTGTTTCACTTCCAAAGATCAAGTTTGAATTGTCTCCATTCCGTTTATTCAATTTAATGGCAATTCCGGTTCTCTCAATGTTTTTGACAAAACTTCTCACTGAAGATTTACCTAGATTGTTTGTACGTCCAAAGAAAATTGTTTTGGATTTCCAGAAGGGAAAAGCTGTTGGCCCTATTGCTGATGCTTTAAAATCTGGAGAAATGCAAGATGGAAACAAGGATTTTGTTGGTGAACTATCTGTCACTCTTGTGGATGCTCGAAAACTTTCTTATCTTTTCTATGGAAAGACAGATCCATATGTTATTCTTAGCTTGGGGGATCAAATTATACGCAGCAAAAAGAACAGTCAAACAACTGTCTTTGGCCCCCCCGGTATGCCAATTTGGAATCAGGATTTTCATATGCTTGTCATTAACCCTAAAAGGCAAAGGTTATGCATCCAAGTAAAGGACTCCCTGGGATTTTTAGATTTGACTATAGGTACAGGAGAGGTTGATCTGGTATCCCTTAAAGACACTGTACCGACCGACAGGATTGTGGTTTTGCAAGGTGGTTGGGGATTCTTGGGAAAGGGATCTTCTGGGGAGATATTACTACGGCTAACTTATAAAGCATATGTGGAGGATGAAGAAGATGACAAGACTCTGGCTGATTCCATTGATACAGATGCTTCAGATGATGAGTTGTCTGATTCTGAGGAATCAAATGCTACTAATGAGAAGGATGAAAGAGATTCTATTAATGAAACAGAAAGAGAGTCATTTATGGATGTTTTGGCAGCATTAATTGTTAGTGAAGAATTCCAAGGGATAGTGGCATCTGAAACGGGGTATACCAAAACTTTAGATGATAGCTCAAATACAGGATTTAAAGTATCAAGATCTGCTATTGTTAATGCTGAATCAATTCCTTCAAGTTCTGATAATTCTGAAGGTTCTGGAGGGTCAGCCTTATTCTGGCTTGCTGTGATTACTAGCATATCAGTACTAATTGCTGTCAGTATCGGGGGTTCAAGTTTCTTCAATCCTTAA 2049 0.4051 MILQSASASFDFSQIFPYVCPCNNLGVISGSRDQSFLTFPISRRRRKGLIANSGYRKFRRKWSFRLCAMPTDGSNRNWNAEFSNSTRQGAKSFVLKRISSELEGDELSQESPIQVSSNFTNFQEDPIVDKLRTQLGVIHPIPSPPINRNVVGLFVFFFFVGVIFDKLWTSRRRSKVGSEDSRRGVWPQVPTSFSLFLEKDLQRKESVEWVNMVLVKLWKVYRAGIENWIIGLLQPVIDNLKKPDYVQRVEIKQFSLGDEPLSVRNVERRTSRRANDLQYQIGLRYTGGARMLLMLSLKFGIIPIVVPVGVRDFDIDGELWVKLRLIPTEPWVGAVSWAFVSLPKIKFELSPFRLFNLMAIPVLSMFLTKLLTEDLPRLFVRPKKIVLDFQKGKAVGPIADALKSGEMQDGNKDFVGELSVTLVDARKLSYLFYGKTDPYVILSLGDQIIRSKKNSQTTVFGPPGMPIWNQDFHMLVINPKRQRLCIQVKDSLGFLDLTIGTGEVDLVSLKDTVPTDRIVVLQGGWGFLGKGSSGEILLRLTYKAYVEDEEDDKTLADSIDTDASDDELSDSEESNATNEKDERDSINETERESFMDVLAALIVSEEFQGIVASETGYTKTLDDSSNTGFKVSRSAIVNAESIPSSSDNSEGSGGSALFWLAVITSISVLIAVSIGGSSFFNP 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi05g0002 682 SMART C2_3c 417 521 IPR000008 -
Glsi05g0002 682 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 416 544 IPR035892 -
Glsi05g0002 682 MobiDBLite consensus disorder prediction 551 589 - -
Glsi05g0002 682 Pfam C2 domain 416 511 IPR000008 -
Glsi05g0002 682 CDD C2 418 512 - -
Glsi05g0002 682 CDD SMP_SF 225 388 - -
Glsi05g0002 682 ProSiteProfiles C2 domain profile. 397 519 IPR000008 -
Glsi05g0002 682 MobiDBLite consensus disorder prediction 573 589 - -
Glsi05g0002 682 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 203 390 IPR031468 GO:0008289
Glsi05g0002 682 Gene3D C2 domain 402 545 IPR035892 -
Glsi05g0002 682 MobiDBLite consensus disorder prediction 551 572 - -
Glsi05g0002 682 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 55 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi05g0002 Glsi-ChrGlsi05 552875 608614 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi05g0002 408 509 C2H2 Transcription Factor Family AT4G05330 33.010 7.56e-06 46.6