Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2296 ATGAAAATAATGAGTTCCAAAGATGCCTATGAAGATTGCCTAGGATGGGCAGCAAGAGATGCAACTGGAGTTCTATCTCCTTACAAGTTCAGTCGCAGGGCTCTTGGGGATGATGATGTTTTTATAAAAATTACACATTGTGGAGTTTGTTACGCAGATGTAGTTTGGACAAGGAATAAACATGGTGACTCAAAGTATCCGTTAGTGCCTGGACATGAGATTGCTGGAATTGTAAAAAAGGTTGGGTCCCACGTCCAGCGTTTCAAGGTTGGCGACCATATTGGAGTAGGGACTTACGTTAATTCATGCAGGGATTGTCAATATTGTAATGGGGGATTAGAAGTTCATTGTGTGAAGGGATCAGTTTATACTTTTAACGGTGTTGATGTTGATGGCACAATCACAAAAGGAGGATACTCCAGTTGCATTGTAGTCCATGAAAGGTATTGCTTCACGATACCCAAAAATTATCCATTGGCTTCAGCAGCTCCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCCATGATGCGCCACAAGATGAATCAACCTGGTAAGTCCCTAGGAGTGATTGGCCTTGGTGGCCTTGGTCATATGGCAGTGAAATTTGGGAAGGCTTTTGGGTTGAATGTAACGATTTTCAGCTCAAGCATATCCAAGAAAGAGGAGGCCCTTAGTCTGCTTGGTGCGGACAAATTTGTTGTTTCATCTGACCAACAGCAGATGATGGCATTAACTAAGTCATTCGACTTCATAGTTGACACTGCATCTGGTGATCACCCATTTGATCCTTACATGTCACTTTTGAATACCTCTGGTGTCCTAGTCCTCCTTGGGTTTCCAAGTGTGGTCAAATTCAGCCCTGCAAACCTTATTCTTGGTATGAAAACCATTTCCGGAAGCGTTACAGGAGGTACAAAAGAGACGCAGGAGATGATTGATTTCTGTGCTGCAAACGGAATTTACCCAAATATAGAAGTGATTCCAATTGAATACATAAATGAAGCTCTTCATAGGGTAATAAATAGGGATGTGAAGTATCGGTTTGTGATAGATATTGAAAACTCCCTAAAATAA 1077 0.416 MKIMSSKDAYEDCLGWAARDATGVLSPYKFSRRALGDDDVFIKITHCGVCYADVVWTRNKHGDSKYPLVPGHEIAGIVKKVGSHVQRFKVGDHIGVGTYVNSCRDCQYCNGGLEVHCVKGSVYTFNGVDVDGTITKGGYSSCIVVHERYCFTIPKNYPLASAAPLLCAGITVYAPMMRHKMNQPGKSLGVIGLGGLGHMAVKFGKAFGLNVTIFSSSISKKEEALSLLGADKFVVSSDQQQMMALTKSFDFIVDTASGDHPFDPYMSLLNTSGVLVLLGFPSVVKFSPANLILGMKTISGSVTGGTKETQEMIDFCAANGIYPNIEVIPIEYINEALHRVINRDVKYRFVIDIENSLK 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2296 358 FunFam Uncharacterized protein 16 167 - -
Glsi04g2296 358 Pfam Alcohol dehydrogenase GroES-like domain 38 152 IPR013154 -
Glsi04g2296 358 PANTHER ALDEHYDE REDUCTASE 12 356 IPR047109 GO:0016616
Glsi04g2296 358 FunFam Cinnamyl alcohol dehydrogenase 168 323 - -
Glsi04g2296 358 Gene3D - 168 323 - -
Glsi04g2296 358 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 158 321 IPR036291 -
Glsi04g2296 358 Gene3D - 16 353 - -
Glsi04g2296 358 SUPERFAMILY GroES-like 19 186 IPR011032 -
Glsi04g2296 358 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 71 85 IPR002328 GO:0008270|GO:0016491
Glsi04g2296 358 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 188 215 IPR029752 -
Glsi04g2296 358 Pfam Zinc-binding dehydrogenase 195 317 IPR013149 -
Glsi04g2296 358 CDD CAD1 15 352 IPR047109 GO:0016616
Glsi04g2296 358 SMART PKS_ER_names_mod 23 341 IPR020843 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2296 Glsi-ChrGlsi04 75838385 75840450 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2296 4 358 Monolignol Biosynthesis Gene Families AT1G72680 75.000 0.0 546