Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2292 ATGAACAGTTTATTGTATAGGCTTATAATTTTATGTCCATACTGGCATTTTGTGGGGATATATATATTTTTTCATTATTTTGATTTCAAAGCTATTTTTACGTCAAAGTTCGTTTTTGGAATCGAGGTTAGGGAATCAGCTCAGAGAACCAAGCCTATAAGGACTTCTTCTAATTCTTTGAGGCATGAGATCTTGATCTTCTGTGACTTGCGTTATCTGTTGTCATCTTCAGTAGACAAAACTGTTCGTCTATGGAGAGTGGGATATGACCATTGCCTGAAAGTATTTTTGCACAACAATTATGTGACATGCATACAATTCAATCCTGTGGATGATGATCATTTCATTAGCGGATCTATAGATGGAAAAGTGCGCATCTGGGCAATTCCTGATTGTCATGTTGTTGATTGGACAGATCTTTTCACAAGGGGAATAGACAATCAAGCAGTCAATGTGGTTATTAATTTTGATTTTCCCAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGATTTGGGCACCTTGGCAACTCTTCAATTTGGGAATTACTATGA 564 0.3723 MNSLLYRLIILCPYWHFVGIYIFFHYFDFKAIFTSKFVFGIEVRESAQRTKPIRTSSNSLRHEILIFCDLRYLLSSSVDKTVRLWRVGYDHCLKVFLHNNYVTCIQFNPVDDDHFISGSIDGKVRIWAIPDCHVVDWTDLFTRGIDNQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGNSSIWELL 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2292 187 PANTHER WD REPEAT DOMAIN 44 71 140 IPR040324 -
Glsi04g2292 187 Pfam WD domain, G-beta repeat 92 127 IPR001680 GO:0005515
Glsi04g2292 187 Pfam WD domain, G-beta repeat 66 85 IPR001680 GO:0005515
Glsi04g2292 187 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 95 127 - -
Glsi04g2292 187 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 52 187 IPR001650 -
Glsi04g2292 187 SUPERFAMILY WD40 repeat-like 68 135 IPR036322 GO:0005515
Glsi04g2292 187 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 116 180 IPR027417 -
Glsi04g2292 187 SMART helicmild6 91 176 IPR001650 -
Glsi04g2292 187 Gene3D - 44 131 IPR015943 GO:0005515
Glsi04g2292 187 Gene3D - 132 184 IPR027417 -
Glsi04g2292 187 SMART WD40_4 49 86 IPR001680 GO:0005515
Glsi04g2292 187 SMART WD40_4 89 128 IPR001680 GO:0005515
Glsi04g2292 187 Pfam Helicase conserved C-terminal domain 132 176 IPR001650 -
Glsi04g2292 187 ProSiteProfiles Trp-Asp (WD) repeats profile. 95 127 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2292 Glsi-ChrGlsi04 75747286 75753498 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2292 113 179 Eukaryotic Initiation Factors Gene Family AT1G72730 46.667 3.53e-13 65.1