Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2291 ATGGAAACGTCGACTTGCTTCTTCTGCAGTAGAATCCCAGCAAAATTGGCTTCAAGACCAAGTTTGCATTTCCGTTGTAATGCCTCTAATGTGCCCTTTTCTTCATTTCGTTCCCTCTGCCTATTCACTCGTAAGAATACCTATGCCTTGTGCAGCTCATCCCCTTCATTTGGCTTCCAACAACTCATTCGAAACGGTACCAGCAGCCGCAGTAGTGAAACTAAGCTTTCCAATAATACCAAAAGCAGAAGGAGACGTCACTATAAAACAAGCACCAAGCTTGCTGGTACTAATGCAACCAGCAAGAATGAGTCTTCGCAATCTCAGCCACCTTTGCCAGTCGTAACGGCGGTGGACTTAAACACCCAGATAAAAGAGCAGAAGCAGCAGGGCCAAGCCACTGAGAGGGGCAGAGAAAGTAGCTTGACGGCACCGCTGAACGTCAGTGGTATCTATCAGAATGGAGACCCACTTGGCTGGAAGGATCTTGGGAAGAGCGTGGTGAGGTGGATTCGTCATAGTATGAGGGCCATGGCTTCCGATTTTGCTTTGGCCGAGGCACAGGGGGAGTTCTCGGAGATGAGGCACCGCATGGGACCGGGTCTCACCTTTATAATCCAGGCTCAGCCTTATCTCAATGCCGTCCCCATGCCTCTTGGCCTTGAAGTTATCTGCTTGAAGGCCTGCACCCATTATCCTACTCTGTTCGATCACTTTCAGAGGGAACTGCGTGACGTTCTCCAAGACCTACAGCGTAAATCATTGGTCCAGAACTGGTGTGAAACCGAATCATGGAAATTGCTGAAGGAGCTCGCCAATTCAGCTCAGCATAGGGCAATTGCAAGAAAGGTAGCCCAGCCGAAGCCTGTCCGAGGCGTTTTGGGAATGGAGATGGAGAAGGCCAAGGCAATACAGCACAGAATTGATGAATTCACCAAGCGCATGTCAGAATTACTCCGTTTAGAAAGGGATGCTGAATTGGAATTTACTCAGGAAGAATTGGATGCTGTTCCTAGACCAGATGATACTTCTGATTCGTCAAAACCGATTGAGTTCTTGGTTAGCCATGGCCAGGCGCAGCAAGAACTCTGTGACACCATTTGTAATTTAAATGCTATCAGTACATCTACAGGACTAGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGGAACCACCGGTTACCACCTACTACTCTTTCACCTGGAGACATGGTTTGTGTAAGAACTTGCGATAGCAGGGGTGCAGTCACAACTTCTTGCCTGCAAGGCTTTGTTAACAATCTTGGGGATGATGGCTGTAGTATAAGTGTTGCTTTAGAGTCACGTCATGGTGATCCTACGTTCTCTAAACTCTTTGGGAAAAGTGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCCCTAATGCTGCTTCAGAAGAATGGTTTACGAAAGAAGAATCCTTCTATTGCTGTTGTGGCTACACTGTTTGGAGATGGGGAAGATGTTGCATGGCTTGAGAAAAATCATTTAGCTGACTGGGATGAAGACAAAATGAATGGACTATTAGGAGGTGAAAACTTTGATAATTCTCAGAAAAGAGCAATTACACTGGCTTTGAATAAGAAGAGGTCGGTATTGGTTATCCAAGGGCCTCCTGGTACAGGAAAAACGGGTTTGCTCAAGCAACTTATAGCATGTGCTGTTCAGCAAGGTGAAAGGATACTTGTAACAGCACCTACTAATGCAGCTGTTGATAACATGGTTGAAAAGCTTTCTAATATTGGATTAAACATAGTGCGGGTTGGCAATCCAGCTCGTATATCAAAAACTGTGGGATCAAAGTCTTTAGGAGAAATTGTAAATGCTAAGCTTGCTAGTTTTCGGGCAGAGTATGAAAGGAAGAAATCAGATCTAAGGAGAGATCTTAGACATTGTTTAAAAGATGATTCGTTAGCTGCTGGTATACGCCAACTTCTGAAACAGCTGGGAAGGTCACTGAAGAAAAAGGAAAAAGAAACTATGAATGAAGTGCTATCTAGTGCTCAAGTCGTGCTTGCCACTAATACTGGAGCAGCTGATCCTTTGATTCGAAGGCTAGACACTTTTGACGTGGTTGTTATAGACGAAGCTGGACAGGCCATTGAACCTTCTTGCTGGATTCCTATATTGCAGGGAAAGCGTTGTATTCTTGCTGGTGATCAATGCCAACTTGCTCCAGTCATATTGTCTAGAAAGGCCTTAGAAGGTGGCCTTGGAGTATCTCTACTGGAGAGAGCTACTACTTTGCATGAAGGTGTTCTCACCACCAGGTTATCAATACAATACCGTATGAATGATGCAATTGCTAGTTGGGCCTCAAAGGAGATGTATGGCGGATTACTGAAATCATCTGAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTCAAGCCTACATGGATAACGCAATGCCCCCTATTGTTGCTTGATACAAGAATGCCATATGGAAGTCTGTCAGTTGGTTGTGAAGAGCATCTAGACCCAGCTGGAACAGGCTCCTTTTATAATGAAGGAGAAGCTGATATCGTTGTGCAGCATGTCTTTTCATTAATTTGTGCTGGTGTTAGCCCAACGGCTATTGTAGTGCAATCTCCTTATGTTGCTCAAGTACAACTTTTGAGGGATATGCTTGATGAGCTTCCTGAGGCTGTTGGTACCGAGGTTGCAACTATTGATAGCTTTCAAGGTCGGGAAGCTGATGCAGTAATTATATCCATGGTACGGTCAAACACTTTAGGTGCTGTTGGATTCCTCGGTGATAGCAGAAGAATCAATGTTGCCATAACAAGGGCACGCAAACATGTAGCAGTGGTGTGTGATAGCTCGACAGTATGCCACAATACCTTCTTAGCGAGACTTCTGCGTCATATCCGTCATTTCGGTAGGGTGAAGCATGCAGAACCCGGTAGTTCTGGAGGGTCTGGGCTTGGGATGAATCCAATGTTACCCTCCATTAATTAG 3018 0.4523 METSTCFFCSRIPAKLASRPSLHFRCNASNVPFSSFRSLCLFTRKNTYALCSSSPSFGFQQLIRNGTSSRSSETKLSNNTKSRRRRHYKTSTKLAGTNATSKNESSQSQPPLPVVTAVDLNTQIKEQKQQGQATERGRESSLTAPLNVSGIYQNGDPLGWKDLGKSVVRWIRHSMRAMASDFALAEAQGEFSEMRHRMGPGLTFIIQAQPYLNAVPMPLGLEVICLKACTHYPTLFDHFQRELRDVLQDLQRKSLVQNWCETESWKLLKELANSAQHRAIARKVAQPKPVRGVLGMEMEKAKAIQHRIDEFTKRMSELLRLERDAELEFTQEELDAVPRPDDTSDSSKPIEFLVSHGQAQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGDMVCVRTCDSRGAVTTSCLQGFVNNLGDDGCSISVALESRHGDPTFSKLFGKSVRIDRIQGLADTLTYERNCEALMLLQKNGLRKKNPSIAVVATLFGDGEDVAWLEKNHLADWDEDKMNGLLGGENFDNSQKRAITLALNKKRSVLVIQGPPGTGKTGLLKQLIACAVQQGERILVTAPTNAAVDNMVEKLSNIGLNIVRVGNPARISKTVGSKSLGEIVNAKLASFRAEYERKKSDLRRDLRHCLKDDSLAAGIRQLLKQLGRSLKKKEKETMNEVLSSAQVVLATNTGAADPLIRRLDTFDVVVIDEAGQAIEPSCWIPILQGKRCILAGDQCQLAPVILSRKALEGGLGVSLLERATTLHEGVLTTRLSIQYRMNDAIASWASKEMYGGLLKSSETVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEHLDPAGTGSFYNEGEADIVVQHVFSLICAGVSPTAIVVQSPYVAQVQLLRDMLDELPEAVGTEVATIDSFQGREADAVIISMVRSNTLGAVGFLGDSRRINVAITRARKHVAVVCDSSTVCHNTFLARLLRHIRHFGRVKHAEPGSSGGSGLGMNPMLPSIN 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2291 1005 Coils Coil 632 652 - -
Glsi04g2291 1005 CDD DEXXQc_SMUBP2 530 780 - -
Glsi04g2291 1005 Coils Coil 656 676 - -
Glsi04g2291 1005 Gene3D - 314 763 IPR027417 -
Glsi04g2291 1005 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 530 967 IPR027417 -
Glsi04g2291 1005 Gene3D - 334 465 - -
Glsi04g2291 1005 Pfam AAA domain 756 960 IPR041679 -
Glsi04g2291 1005 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 144 989 - -
Glsi04g2291 1005 CDD SF1_C_Upf1 781 977 IPR047187 -
Glsi04g2291 1005 Gene3D - 779 987 IPR027417 -
Glsi04g2291 1005 SMART AAA_5 546 761 IPR003593 GO:0016887
Glsi04g2291 1005 FunFam DNA-binding protein SMUBP-2 isoform X2 334 465 - -
Glsi04g2291 1005 MobiDBLite consensus disorder prediction 92 112 - -
Glsi04g2291 1005 Coils Coil 308 328 - -
Glsi04g2291 1005 MobiDBLite consensus disorder prediction 68 112 - -
Glsi04g2291 1005 FunFam DNA helicase A 779 987 - -
Glsi04g2291 1005 SMART ultradead3 527 780 IPR014001 -
Glsi04g2291 1005 Pfam AAA domain 531 747 IPR041677 GO:0004386
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2291 Glsi-ChrGlsi04 75705770 75745967 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2291 517 720 Core DNA Replication Machinery Family AT1G08840 28.155 4.59e-09 58.5