Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2276 ATGGGAGTTGTTCACTATGAAATCAGTGCAAATTCTCCTTTGGCTTTCAATTATTGCGAAAATTCATTTACTTCTTATAGGGTTTCTATTTCTTCAAGACCCTTTTTTGGTATGGCTTTGAACACAAAAAATTCTAGGAAAATTCAATTTTTGCACACTCAAAAGCTCAATTACATGCCAGTTAGTGCTTCACTGAAGAGTGGCTGCAATGTTGGGTTGATTAGTGATGGTCTTCTTTCAAAAGAATTAGAGTTTAAGCCATCTTTTGATGATTATTTGAAGGAAATGGAGTCTGCCCGAAATGATAGGGGCAAGAAGCATGCTAGAACTACTGAAAAACAGATGAGAGAAAAGGGTATGTTGAGGAAACCAAGGTTGGAAGGAGATGAAGGAAATAAAAAGGTTGGAAAGCTTGGAGGGTGTATGGATAAAACAAATGAGTTTAAAAGTGCAAAAAAGGATGGGACATTAAAGGTTGTCGAAACAGTTATGGGCAAAGAAGGCTCCTTTGTAGGTAATGGTAAGCTTAGAGGAAGAGGGACTAGAAGATTTAAACATAAGCATGATGGGAAAGGAAGAAAACCTGATGTTACTGTAAAGCAAAAACAGAGGGCAGAGATAATGGAAGATGGAGTGTTAAAACACCAGAATCATAGATCAAAACCAGAATCTGATGGCCGCCGTTTGATTAAAAGGGAACATGGAAGGATAGGCAATAGCAAAGTTTGGTCTAATTTGAATGATAACCGTGGCAGCATTGTAGAGGCGGAAGTCAGTCATGAATTACATTCTTCAAGAATAATCTGGGAAAAGGATGTTACCACCAGCCAATGGGACCGCAACTCAAGAGGGAAAACCCCTAGGGGAGATGAAATTGTTGTTGGCAACAATGTTATGCGCAGAGGACATGAGAGAAGCGACATGAAAAATAAGAATGTGATGAAAGAAAATGGACAGGAAAATGTCAAATTGAATGGAAGTAGCAAGCATTTCCTTGCTAGAGGTGATGATTATGACAACTTTGTGGTGGAAAGAGCAGCATTTAAGACTCTTGAGCAGTTCAATGATGCTATGAGCAAGCCACAAGTTTCACATAAGGAAATGGAGGATAAAATTCAAAGGCTGGCAAAATCGTTGAATGGTGCAGATATCAATTTGCCTGAATGGATCTTTTCTAAGATGATGAGAAGTGCGAAGATAAAATTTAATGACTATTCTATAGTGAGGGTAATCCAAATATTGGGAAAACTAGGAAACTGGCAGCGGGTGATACAGGTCATTGAATGGCTTCAAAGGCGTGAACGTTTCAAATCCCATAAGCTAAGGCATATATACACTGCTGCTCTTGATGCACTTGGAAAAGCAAGGAGACCTGTAGAGGCACTAAATGTATTTCATGCGATGCAGCAACAAATGTCCACATATCCTGATTTAGTAGCTTATCATAGTATTGCTGTCACTCTTGGACAAGCAGGGCACATGAAAGAACTCTTTGATGTGATTGATATTATGCAGTTGCCACCTAAGAAGTTTAAAACAGGGGCACTTGGGAACTGGGATCCAAGACTGGAACCAGATATCATAGTGCATAATGCAGTCCTTAATGCTTGTATTCAGAAGAAACAGTGGGAAGGGGCCTTTTGGGTTCTACAACAGTTAAAGAAGCAAGGCGAACAACCTTCTGCTACAACTTATGGCCTTGTTATGGAGGTGATGTTTTCATGTGGCAAGTACGACTTGGTTCATGAATTTTTCAGGAAAGTTCAGAAGTCTTCTATTGCCAATTCGTTGACATATAGAGTTCTTGTGAATACACTATGGAAAGAGGGTAAAACTGATGAGGCTATATTGGCTGTCCAAAAGATGGAAAAACGTGGAATTGTAGGTTCTGCTTCTCTTTATTATGACCTTGCTCGATGTCTTTGTGCAGCTGGAAGATGTAGTGAGGCACTGATGCAGATAGAGAAGATATGTAAGGTTGCAAACAAGCCACTAGTAGTGACCTACACTGGCTTAATTCAAGCATGTCTGAACTCTGGAAACATCCTAGATGGGGCATACATTTTTGAAAAAATGAAGGATATTTGCTCTCCAAATCTTGTTACGTGTAACATGATGTTGAAAGCTTACCTGGAAAATGGGATGTTTCAAGAAGCAGTAGATTTGTTTGAAAAGATGTCAGAAAATGCAAGTCATGTAAGGAGAAATTCTGATTACAAAATTTGGGTGATACCAGATATTTACACATTCAACACCATGTTAGATGCATGTATTGCAGAGAAGAGGTGGAATTATTTTGAATGCGTCTATCAAAAGATGCTATACCATGGTTACCACTTCAACCAAAAGCGTCATCTTCGAATGATACTGGAGGCATCAAAAGCTGGAAAGGAAGGGCCTATTGAAACAACATGGAAGCACTTGGCCGATACAGATCGTGTTCCGCTTGCTCCTCTAATCAAGGAAAGGTTCTGTATGAAGCTTGAAAAAGATGACCATATTGGAGCTCTTGCATGCATAACCAATAATCCCTCAAAAGACTTGCAGGCATTTTCCAAGTTTTCATGGTTGAATCTATTCAAAGAAAACTCTCAACGGTTTCAGAAGGATACCCTTGTTAGGTTAATGAATGAGGTTAACTACCAAGTTTCCAAGAGTACCGTGCCACTTCCAGCACTTGAGAATCTAATGCAATCTTGGAAAGAATTTTGTGCCACTGAGATGGAATCAGTGAAAACTGTACATGCAGCAGAAATTGAACCAGTTGGTTATAACTCTAGATGTTCTTTTGTGTAA 2796 0.3927 MGVVHYEISANSPLAFNYCENSFTSYRVSISSRPFFGMALNTKNSRKIQFLHTQKLNYMPVSASLKSGCNVGLISDGLLSKELEFKPSFDDYLKEMESARNDRGKKHARTTEKQMREKGMLRKPRLEGDEGNKKVGKLGGCMDKTNEFKSAKKDGTLKVVETVMGKEGSFVGNGKLRGRGTRRFKHKHDGKGRKPDVTVKQKQRAEIMEDGVLKHQNHRSKPESDGRRLIKREHGRIGNSKVWSNLNDNRGSIVEAEVSHELHSSRIIWEKDVTTSQWDRNSRGKTPRGDEIVVGNNVMRRGHERSDMKNKNVMKENGQENVKLNGSSKHFLARGDDYDNFVVERAAFKTLEQFNDAMSKPQVSHKEMEDKIQRLAKSLNGADINLPEWIFSKMMRSAKIKFNDYSIVRVIQILGKLGNWQRVIQVIEWLQRRERFKSHKLRHIYTAALDALGKARRPVEALNVFHAMQQQMSTYPDLVAYHSIAVTLGQAGHMKELFDVIDIMQLPPKKFKTGALGNWDPRLEPDIIVHNAVLNACIQKKQWEGAFWVLQQLKKQGEQPSATTYGLVMEVMFSCGKYDLVHEFFRKVQKSSIANSLTYRVLVNTLWKEGKTDEAILAVQKMEKRGIVGSASLYYDLARCLCAAGRCSEALMQIEKICKVANKPLVVTYTGLIQACLNSGNILDGAYIFEKMKDICSPNLVTCNMMLKAYLENGMFQEAVDLFEKMSENASHVRRNSDYKIWVIPDIYTFNTMLDACIAEKRWNYFECVYQKMLYHGYHFNQKRHLRMILEASKAGKEGPIETTWKHLADTDRVPLAPLIKERFCMKLEKDDHIGALACITNNPSKDLQAFSKFSWLNLFKENSQRFQKDTLVRLMNEVNYQVSKSTVPLPALENLMQSWKEFCATEMESVKTVHAAEIEPVGYNSRCSFV 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2276 931 PANTHER OS01G0674700 PROTEIN 20 912 IPR044645 GO:0009658
Glsi04g2276 931 NCBIfam pentatricopeptide repeat 701 729 IPR002885 -
Glsi04g2276 931 NCBIfam pentatricopeptide repeat 444 477 IPR002885 -
Glsi04g2276 931 Gene3D Tetratricopeptide repeat domain 388 592 IPR011990 GO:0005515
Glsi04g2276 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 746 780 IPR002885 -
Glsi04g2276 931 Pfam PPR repeat 598 627 IPR002885 -
Glsi04g2276 931 Pfam PPR repeat 444 470 IPR002885 -
Glsi04g2276 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 595 629 IPR002885 -
Glsi04g2276 931 Pfam Pentatricopeptide repeat domain 665 710 IPR002885 -
Glsi04g2276 931 Pfam Pentatricopeptide repeat domain 523 572 IPR002885 -
Glsi04g2276 931 Gene3D Tetratricopeptide repeat domain 593 657 IPR011990 GO:0005515
Glsi04g2276 931 FunFam Pentatricopeptide repeat-containing protein 370 515 - -
Glsi04g2276 931 Coils Coil 365 385 - -
Glsi04g2276 931 Gene3D Tetratricopeptide repeat domain 658 815 IPR011990 GO:0005515
Glsi04g2276 931 SUPERFAMILY HCP-like 536 728 - -
Glsi04g2276 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 699 733 IPR002885 -
Glsi04g2276 931 MobiDBLite consensus disorder prediction 170 198 - -
Glsi04g2276 931 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2276 Glsi-ChrGlsi04 75420321 75430152 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2276 546 820 Glycosyltransferase AT1G05670 21.147 6.50e-08 54.7