Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2275 ATGGGCCCGCCTCCTGTCCAGCCCATTTCGTGTTGTTGCTGTCTCGCAAAGGGGTGGCAGGAAGGAATCTTCGTGGACAGGCGTTGCCTCTTTCTCCAACATTCACAAATATCCCCAGCTTCCGGACACGACCACAAGCTCGAAGTCACGGTCGTATGCACGCTGTCACACGGAAAAAGAGCAACCTCAAATGGTTCCGACAAAGCTCGATCTGTGTCTGATGCCATATTTTGCCTCTGGCTATGTTTGATTTCGAAAATCCTGCGTCTTAAACTCACAGGACTAGCAGTATCAGTGGAAATGAATAGTAGCAGTGCAAGTGGCGGAGGTGGGTCTGTGGGGGCCGCTATGGGGATGATGGGTATTAGTAGGTCGCCATTCACAGTGTCTCAGTGGCACGAACTGGAGAACCAAGCTCTGATTTTCAAGTACATGATGGCAGGTCTTCCTGTGCCACCTGAGCTTGTGCTCCCCATTCAGAAGAGCTTCGAGTCCATTTCACAAAGGTTCTATCACCATCCCACCATGAGTTATTGTTCCTTCTATGGGAAGAAGGTGGACCCAGAGCCGGGCCGATGCAGAAGGACTGATGGAAAAAAGTGGAGGTGCTCCAAGGAAGCATACCCAGACTCCAAGTACTGTGAGCGCCACATGCACCGTGGCCGCAACCGTTCAAGAAAGCCTGTGGAATCACATACCATGACACAGTCGTCATCCACTGTGACATCACTGACTGTCACAGGCGGCAGCAGCAGCACTGGTAATTTCCAGAACCTTTCCGCAAATGCCTTTGGTAATCCCCAAGGCACTGGTTCTGGAACCTATCAACCCCAGTATCATCTGGATTCCATTCCCTATGGGATCCCAAGTAAAGAATACAGGTATCTTCAGGGACTTAAATCTGAGGGTGGTGAACATAGTTTCTTTTCTGAAGCTTCGGGAAGTAACAGGGCTCTCCAGATGGAGCCACCACTGGAAAACACATGGCCTTTGATGCCACCCAGAGTTGCCTCATTTTCTACATCGAAGTCAAGCAACAATTCCATGTTGCAGAGTAATTATCCCCAGCATTCATTTTTATCTGGTGAATATGCATCAGGGGAGCCTGCAAAGTCGGATGGCCATTCTCTTCGACCATTATTTGATGAATGGCCTAAAAGCAGGGAGCACTGGTCTGGTCTGGAGGATGAGAGATCCAAGCAGATAGCTTTCTCCACAACACAACTCTCAATATCTATTCCTATGTCATCGTCCGACTTCTCTGCAACGAGCTCTCAATCTCCAAATGGTGAGATTTAA 1299 0.4919 MGPPPVQPISCCCCLAKGWQEGIFVDRRCLFLQHSQISPASGHDHKLEVTVVCTLSHGKRATSNGSDKARSVSDAIFCLWLCLISKILRLKLTGLAVSVEMNSSSASGGGGSVGAAMGMMGISRSPFTVSQWHELENQALIFKYMMAGLPVPPELVLPIQKSFESISQRFYHHPTMSYCSFYGKKVDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVESHTMTQSSSTVTSLTVTGGSSSTGNFQNLSANAFGNPQGTGSGTYQPQYHLDSIPYGIPSKEYRYLQGLKSEGGEHSFFSEASGSNRALQMEPPLENTWPLMPPRVASFSTSKSSNNSMLQSNYPQHSFLSGEYASGEPAKSDGHSLRPLFDEWPKSREHWSGLEDERSKQIAFSTTQLSISIPMSSSDFSATSSQSPNGEI 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2275 432 Pfam QLQ 126 160 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi04g2275 432 ProSiteProfiles WRC domain profile. 187 231 IPR014977 -
Glsi04g2275 432 Pfam WRC 188 230 IPR014977 -
Glsi04g2275 432 PANTHER GROWTH-REGULATING FACTOR 5 101 419 IPR031137 GO:0005634|GO:0006351|GO:0032502
Glsi04g2275 432 MobiDBLite consensus disorder prediction 219 252 - -
Glsi04g2275 432 MobiDBLite consensus disorder prediction 258 277 - -
Glsi04g2275 432 SMART QLQ_2 125 161 IPR014978 GO:0005524|GO:0005634|GO:0006355
Glsi04g2275 432 MobiDBLite consensus disorder prediction 360 379 - -
Glsi04g2275 432 MobiDBLite consensus disorder prediction 230 252 - -
Glsi04g2275 432 ProSiteProfiles QLQ domain profile. 126 161 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2275 Glsi-ChrGlsi04 75409881 75415421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2275 122 230 GRF Transcription Factor Family AT3G13960 61.062 5.60e-44 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Glsi04g2275 WRC 2.5e-21 No_clan