Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2273 ATGCATCCTAACCGAGCTTGCACAGGGTCAAAGGCTGAATTTTCTGATGAAAACTGTCGTTTAGGGGAGACTAATCAGTATTCGATGGATGAGGGTGATGTATCTTCTCTTAGGAGCAGGGCTTGTGAAAGCCTCCAGCAAGCTGTCAGTGAAGCCAGTAACATGCTCAGTGTTAATTCCAATCATGATTCTCTATCTGAAAATGCTGATAGTAAGCAGAATTTATCAAATAAGTGTCAGGATTCTAAGTGTTTAGAAGGTATTGAAGATAACACCTCTTGTATTAGTAGAGCCAGCAATGCTAATTTAGGGAATGGTAGCCATTCCAGTAATGCAGACAGAACAAATATATCTAGTTGTTCAGCTTCAGTTAATCTCTTGGGGGCAGAAGGATCTGGAGGTGCACCATCTTTTGACATGTCTGGCTTGCCTGAGGTTCCCTCATCTAAAGATTCTGATACTGGGCATAGCTTACCTAAGGTACAAGGCCAATATGCGCAGTCTCAAAGTGGTAAATCTCATTTGAATATTCCAAGTTTAATGGATATGGAAAGGGATGCTTGTTCTCATATCCCTGAAAAATCTGAATGCTCCATGGAAAATATCAATTCATCATTGACAAAAGAGGTAGTACCTACTGTTGTTTCTGGTGAGAAGTCTCTTGCAGTTAAGGATAACCCTATTGAAGGTGAAACTCGTAAATGTTCAGTCCAAGATGGGCAGGATAAGGCTGAACAGCTGCTTGAATCATCTCGCATAGAGGAGCCTCAATCTGAAGATGAGAGTAACGAATCAGATGTTGTAGAACATGATGTAAAAGTGTGTGATATATGCGGAGATGCTGGTCGTGAAGATCTGCTTGCCATATGCAGTAGGTGTAGTGATGGTGCAGAGCACACTTACTGCATGCGAGAAATGCTTCAGAAGGTCCCTGAAGGAGACTGGTTATGTGAAGAATGCAAATATGCAGAGGAGACAGAAAATCAGAGGCTAGATGTTGAAGAAAGAAAAACCCTCACAGTTAGTTCAACACATCATTCCGGAAAGAGGCATTCTGATAATATAGAACTAGCTCCAGTAGCCAAAAGGCAGGCTCTTGAATCAAGCACAGGATCCCCAAAGTCATCAAGCCCCAAGACAATTGTTGCACTATCAAGAGAATCTTCATTTAAGAGCTTAGATAAAGGTAAAGTGAAGCCTGATAATCAGATGACTACTCGTAATCACTCTGGTGGTGATAACATGGAAAATGCTCTTTCTCCTTCTACTGGCCCTCGGGGTCTACTTCGAAAGGGTTCGCTGTTGAAGTCTAATTCATTCAGCACGTTAAATTCAAAGCCAAGAGTCAAACTTGTTGAGGAAGTTGTTCCCCAAAAGCAGAAAGGCGCTGGAGAACATACTTCTAAGAATATGGAGACACCTGTCCGGATGATAGGCAAATCTATGTCATTCAAATCTGCAAATTTGGGTCGTTCAAGTGCTACTGAATCAAAAGTTAAATTGCTTTCATCTAAATCTATACCTTCTCAGGATTTAAAAGGATCAAGGACTGCCAAAGAATGGGGTGCATTTGACAAGAAAAATCTCTCTAGGGTTGATCGTCCGGTGGTTTGTTCAACAATGACTACTTCTGTTGTTTCAACACCTAAAGGTGATCATAAGCATGCAACTCTCAGTGAAACCAGCAAGCCTTCATCAGTTAGCAACAACCGAGAGTTGAAGGTTAACCAAGATGGAAAATCAAGTACCTTATCAAAATCAATTAGTAGTGGTGGCCGTAAAGTTGTAGATCCTCAAATTAGTTCTGGGAAAATATATACCATTGTTGATGAAAATGTACAAGATATGCAGCCTCGAACACGAGAAACAACAAATCAGGTTGACAAAACCAGAGATAGCTCTAGTGATCGTGTGAGTCCGGATGTCATTACTACTTCAAAAGGTTTATTCTGTCAAAAGTGTAAGGAAATTGGTCATTCTACAGAATGTTGCACAATTGGTAGTACAAAGGAATCTGGTAATGAATTACCTGCCACTATTACAAGTAGTTCAATAGAGGAGATGCATAAAGGTAATAAGTTGAAAGCTGCAATCGACGCAGCTTTGCGTAGAAGGCCTGAAATATACAAAAAGAAAGAAATACCTAATCAAATGGATGAGTTTCCTACATCTGGCAAAGACTTGAATTGTGAAGTCACGTCTCAAGATCAAATATTGGTTTCTAACACCCCAAAGAATAATATGTCTGCTGAAAATCATGAGGGGCAGGAAATTGTGGAGAATTCTGCATTTGAAACTTCAAAATGTTCATTTGATGCAAAGCAGCCCAGCTCATGCCAAACTGATTCTGGCTCTGAACCAGGGAATTTAGATTCTATTGGTCCTGCTAATGGAAAGCCTGCCGTGAGAGACTTACCAAATCAGGCTTTGCCAATCTCACATGTTCATTCGAAGATATTGCCCATTCCAGAATATGAATACATCTGGCAGTATGAAACATCTTTTCATGAGCTAGTTGTCTTTTGCTTCCGGATTGTCTTTACTATATTACTGTTTTGTGTTGCCGTTCAGTGTGTTCTACATGAGATTTATTCTTTGGCATGCAGGGGTGTCTTTGAGGTGCATAGAAGTGGAAAACCTCCTGAATTATGGGCTGGAATTCAAGCACATTTGTCAACTTGTGCTTCATCTAAGGTTCTTGAAGTGGCGAACAAGTTACCATCCAAAGTTCCCCTCAATGAAGTTCCTCGCCTGAGCACATGGCCTTCACAGTTTCTTCAAGGTGGTGCTAAAGAAAATAATATTGCGCTTTACTTCTTTGCCAAAGATATGGAAAGTCATGAGAGACACTACAGGGGTCTACTGGATCACATGATTAGAAACGATTTAGCACTTAAAGGAATATTTGACGGTGTCGAACTTCTTATATTCCCATCCAATCAGCTTCCTGAAAAATCACAGCGTTGGAATATACGCACTGTTCACCAAAGCGTGTGA 2997 0.4061 MHPNRACTGSKAEFSDENCRLGETNQYSMDEGDVSSLRSRACESLQQAVSEASNMLSVNSNHDSLSENADSKQNLSNKCQDSKCLEGIEDNTSCISRASNANLGNGSHSSNADRTNISSCSASVNLLGAEGSGGAPSFDMSGLPEVPSSKDSDTGHSLPKVQGQYAQSQSGKSHLNIPSLMDMERDACSHIPEKSECSMENINSSLTKEVVPTVVSGEKSLAVKDNPIEGETRKCSVQDGQDKAEQLLESSRIEEPQSEDESNESDVVEHDVKVCDICGDAGREDLLAICSRCSDGAEHTYCMREMLQKVPEGDWLCEECKYAEETENQRLDVEERKTLTVSSTHHSGKRHSDNIELAPVAKRQALESSTGSPKSSSPKTIVALSRESSFKSLDKGKVKPDNQMTTRNHSGGDNMENALSPSTGPRGLLRKGSLLKSNSFSTLNSKPRVKLVEEVVPQKQKGAGEHTSKNMETPVRMIGKSMSFKSANLGRSSATESKVKLLSSKSIPSQDLKGSRTAKEWGAFDKKNLSRVDRPVVCSTMTTSVVSTPKGDHKHATLSETSKPSSVSNNRELKVNQDGKSSTLSKSISSGGRKVVDPQISSGKIYTIVDENVQDMQPRTRETTNQVDKTRDSSSDRVSPDVITTSKGLFCQKCKEIGHSTECCTIGSTKESGNELPATITSSSIEEMHKGNKLKAAIDAALRRRPEIYKKKEIPNQMDEFPTSGKDLNCEVTSQDQILVSNTPKNNMSAENHEGQEIVENSAFETSKCSFDAKQPSSCQTDSGSEPGNLDSIGPANGKPAVRDLPNQALPISHVHSKILPIPEYEYIWQYETSFHELVVFCFRIVFTILLFCVAVQCVLHEIYSLACRGVFEVHRSGKPPELWAGIQAHLSTCASSKVLEVANKLPSKVPLNEVPRLSTWPSQFLQGGAKENNIALYFFAKDMESHERHYRGLLDHMIRNDLALKGIFDGVELLIFPSNQLPEKSQRWNIRTVHQSV 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2273 998 MobiDBLite consensus disorder prediction 560 596 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 335 418 - -
Glsi04g2273 998 SUPERFAMILY FYVE/PHD zinc finger 261 325 IPR011011 -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 774 798 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 133 173 - -
Glsi04g2273 998 ProSiteProfiles Zinc finger PHD-type profile. 272 323 IPR019787 -
Glsi04g2273 998 PANTHER - 272 990 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 365 387 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 612 641 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 774 790 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 543 596 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 403 418 - -
Glsi04g2273 998 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 214 335 IPR013083 -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 622 636 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 335 357 - -
Glsi04g2273 998 SMART PHD_3 274 321 IPR001965 -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 53 75 - -
Glsi04g2273 998 MobiDBLite consensus disorder prediction 147 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2273 Glsi-ChrGlsi04 75364803 75376089 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2273 271 332 C2H2 Transcription Factor Family AT3G01460 33.871 1.18e-06 50.8