Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2262 ATGGCATTAGAGTTGAATTTCCGCATCCAAAAAGGGTTTTATTTGATGCTGATATTTTGTTTTGGCGTTGTCATAGTATGTTCGCTTAATGAAGAGGGTTCATATCTTTTGGAGTTTAAGGGTTCCCTTTCTGACCCACAAAGCAATCTCCAAAACTGGAATTCTTCTGATTTGACTCCTTGCAATTGGACTGGTGTGCATTGCAATGATTCGATGGTAACTTCTGTAAATCTTTTTCAACTTAATCTGTCTGGTTCTTTATCACCAATCATCTGTAAGCTGCCTCGACTGGTTGAGTTGAATCTGTCAAAAAATTTCATTTCTGGCTCCATTCCTGTTGACTTTATTAACTGTAGTAGTTTAGAGAAATTAGACCTGTGTACAAACAGGTTTCATGGAAAACTTCTTAACCCTATGTTCAAAATCACCACACTGAGAAAGTTTTATTTGTGTGAAAATTATATGTATGGTGAAGTGCCTGAAGAGATAGGGAATTTAATTTACCTTGAAGAGCTAGTCATTTATAGCAATAATTTAACTGGAAGAATTCCTTCATCAATAAGTAAATTGAAGCAGCTTAGAATTATCAGGGCAGGCTTGAACGCCTTCTCAGGTCCAATACCTGCAGAAATTAGTGAGTGCAAGAGCTTGGAGATATTAGGATTGGCACAGAATCAGCTAGAAGGTTCAATTCCAAGGGAACTCCAAAAGCTTCAGAACCTTACCCAATTAATTCTGTGGCAAAACAGTTTATCTGGAGAGATTCCCCCAGAGATTGGTAATATCAGTAGCTTGGAGTTACTTGCCTTGCATCAAAATTCATTTAGTGGTGCGCTCCCCAAAGAGCTGGGAAAGTTATACAAGTTACAGAGGTTGTACGTATACACCAACCACTTGAATGGAACTATTCCTCCAGAGCTAGGGAACTGTACAAGTGCCACTGAGATAGATTTATCTGAAAACCGGTTGAGTGGGATTATTCCTAGAGAGTTGGGTCAGATCTCTGATCTTATCTTGCTTCATCTATTTGAAAATCTTCTGCAGGGACGAATCCCTCGGGAGCTTGGGCAACTACAGCAGCTAGAAAAATTAGACCTGTCCATGAATAACTTGACAGGTACAATTCCCCTAGAGTTTCAAAATCTTACGTACATGGAGGATTTGCAGCTATTTGACAATCAACTTGTGGGTGAAATTCCTCCTCATCTTGGAGCTAATAGCAACCTCAGTATTCTTGATATATCTGCAAATAATCTTGTCGGTATGATACCTGTCCATCTTTGCAAGTTTCATAACCTGGAATTTCTGAGCCTTGGGTCAAATAGGCTGTTTGGAAATATTCCATATGACCTGAAAACCTGCAAGTCACTTGTGCAACTGATGCTGGGGAACAACCGGCTGACAGGGAGCCTCCCTGTTGAATTATATGAGCTTCATAATCTTTCTGCACTTGAACTCTATCAGAATCGATTCTCTGGGCTAATAAACCCAGGGATAGGCCAACTTCGGAATTTAGTGAGGCTTCTTCTTTCTGATAATTATTTTGTTGGGTATCTTCCTCCTGAAATTGGAAATTTAGCACAACTTGTCTCATTCAATGTTTCCTCTAATCGTCTCAGTGGAGCTATTCCTCATGAGTTGGGAAACTGCAGCAAACTACAGAGACTTGATCTTAGTAGAAATCAGTTCACTGGTGACCTTCCTGATGAACTTGGCAACCTGGTGAATCTGGAATTGTTGAAACTTTCTGATAATAGATTTTCAGGAGTAATACCAAGCGCTTTAGGGGATCTCATTCGTCTTACAGAGCTGGAACTTGGGGGTAACATATTTTCAGGGAGCATTCCTTTTCATTTGGGACGACTTGCAGCTCTTCAGATTGCCCTTAACCTGAGCCATAACAAACTATCTGGTGCAATTCCTGACAGCCTGGGGAACTTACAAATGTTGGAATCCCTTTATTTAAATGACAATGAGCTAGCTGGTGAAATTCCCACATCAATTGGTGACCTACCCAGCCTTTTAGTATGCAATGTTTCTAACAATATCTTGGTAGGAACTGTTCCAAACACTCCTGCATTTCGAAGGATGGATTTCACAAATTTTGTTGGAAACAATGGGTTGTGCCGGATAGGTTCCAACCAATATCATGCATCCATATCTCCATCTTGTACTCCAAAACCAAGCTGGATCAAAGATGGTTCGTCAAGGGAAAAGATAGTGAGCATTGTTTCAGGGGTAGTTGGATTAGTTTCGCTAATGTTCATAGCCTGTATATGTTGGGCCATGAAGCGCCGTAGCCCTGCTTTTGTCTCACTTGAAGGGCCAAAAAAGCCTCATGTCCTAGATAACTATTATTTTCCTAAAGAAGGTTTTACATACCAGGATCTCTTGGAAGCCACTGGTAATTTTTCAGAAGCTGCGGTTATAGGAAGAGGAGCATGTGGCATTGTCTACAAGGCTGTTACAGCCAATGGTGAGGTGATTGCTGTCAAAAAACTGAACTCTCGTGGAGAAGGAACTAATGCTGACAGAAGCTTTATGGCAGAGATTTCAACCCTTGGAAAGATTAGGCACAGAAATATTGTGAAGCTGCATGGATTTTGTTATCATGAGGATTCTAATCTTCTCTTATACGAGTACATGGAAAATGGCAGCCTTGGGGAACAACTTCATGCAAATCCAGACATGTGTTCACTGGATTGGAATAGTCGATATAATATTGCTCTTGGAGCTGCAGAAGGCTTGTGCTATCTCCATTATGATTGTAAACCTCAGATCATCCACCGTGATATAAAGTCAAACAACATATTACTTGATGAAATGTTTCAAGCACATGTTGGAGACTTCGGCTTGGCAAAGTTGATTGACTTTTCCTACTCCAAGTCCATGTCTGCTGTGGCAGGTTCATATGGCTACATAGCTCCTGAATATGCTTACACCATGAAGGTGACAGAGAAATGCGACATCTATAGCTTTGGGGTAGTTTTGCTGGAACTTGTCACCGGCCGTTCACCGGTCCAACCGTTAGAACAGGGTGGTGATTTGGTGACTTGGGTGAGAAGAGCGATTCAAGAAGCCGTACCAACGGTTGAACTATTGGACAAGCGACTGAATCTGAGTGTACAGAGGACAGTTGAAGAGATGTCTCTTATTCTCAAAATTGCTTTGTTTTGCACAAGTACGTCTCCTTTTAAAAGGCCAACAATGAAAGAGGTCATTGCAATGTTTATTGATGCTAGAGAATATGTCAGCAAGTCTCCCTCATCCCCTACTTCAGAATCCCCACTTGATGAAGATGCATCTTCCAGAGTATAA 3318 0.4096 MALELNFRIQKGFYLMLIFCFGVVIVCSLNEEGSYLLEFKGSLSDPQSNLQNWNSSDLTPCNWTGVHCNDSMVTSVNLFQLNLSGSLSPIICKLPRLVELNLSKNFISGSIPVDFINCSSLEKLDLCTNRFHGKLLNPMFKITTLRKFYLCENYMYGEVPEEIGNLIYLEELVIYSNNLTGRIPSSISKLKQLRIIRAGLNAFSGPIPAEISECKSLEILGLAQNQLEGSIPRELQKLQNLTQLILWQNSLSGEIPPEIGNISSLELLALHQNSFSGALPKELGKLYKLQRLYVYTNHLNGTIPPELGNCTSATEIDLSENRLSGIIPRELGQISDLILLHLFENLLQGRIPRELGQLQQLEKLDLSMNNLTGTIPLEFQNLTYMEDLQLFDNQLVGEIPPHLGANSNLSILDISANNLVGMIPVHLCKFHNLEFLSLGSNRLFGNIPYDLKTCKSLVQLMLGNNRLTGSLPVELYELHNLSALELYQNRFSGLINPGIGQLRNLVRLLLSDNYFVGYLPPEIGNLAQLVSFNVSSNRLSGAIPHELGNCSKLQRLDLSRNQFTGDLPDELGNLVNLELLKLSDNRFSGVIPSALGDLIRLTELELGGNIFSGSIPFHLGRLAALQIALNLSHNKLSGAIPDSLGNLQMLESLYLNDNELAGEIPTSIGDLPSLLVCNVSNNILVGTVPNTPAFRRMDFTNFVGNNGLCRIGSNQYHASISPSCTPKPSWIKDGSSREKIVSIVSGVVGLVSLMFIACICWAMKRRSPAFVSLEGPKKPHVLDNYYFPKEGFTYQDLLEATGNFSEAAVIGRGACGIVYKAVTANGEVIAVKKLNSRGEGTNADRSFMAEISTLGKIRHRNIVKLHGFCYHEDSNLLLYEYMENGSLGEQLHANPDMCSLDWNSRYNIALGAAEGLCYLHYDCKPQIIHRDIKSNNILLDEMFQAHVGDFGLAKLIDFSYSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSFGVVLLELVTGRSPVQPLEQGGDLVTWVRRAIQEAVPTVELLDKRLNLSVQRTVEEMSLILKIALFCTSTSPFKRPTMKEVIAMFIDAREYVSKSPSSPTSESPLDEDASSRV 1105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 28 182 - -
Glsi04g2262 1105 SMART LRR_typ_2 238 262 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 478 502 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 574 597 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 94 118 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 286 310 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 526 550 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 647 671 IPR003591 -
Glsi04g2262 1105 SMART LRR_typ_2 358 381 IPR003591 -
Glsi04g2262 1105 SUPERFAMILY Protein kinase-like (PK-like) 780 1077 IPR011009 -
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 280 382 - -
Glsi04g2262 1105 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 204 315 - -
Glsi04g2262 1105 Gene3D Ribonuclease Inhibitor 431 719 IPR032675 -
Glsi04g2262 1105 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Glsi04g2262 1105 SUPERFAMILY RNI-like 363 686 - -
Glsi04g2262 1105 Pfam Leucine Rich Repeat 360 382 IPR001611 GO:0005515
Glsi04g2262 1105 SMART serkin_6 804 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2262 1105 Gene3D Ribonuclease Inhibitor 28 176 IPR032675 -
Glsi04g2262 1105 Pfam Protein kinase domain 806 1074 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2262 1105 ProSiteProfiles Protein kinase domain profile. 804 1084 IPR000719 GO:0004672|GO:0005524|GO:0006468
Glsi04g2262 1105 Gene3D Phosphorylase Kinase; domain 1 776 881 - -
Glsi04g2262 1105 ProSiteProfiles Leucine-rich repeat profile. 360 381 IPR001611 GO:0005515
Glsi04g2262 1105 Gene3D Ribonuclease Inhibitor 177 235 IPR032675 -
Glsi04g2262 1105 Pfam Leucine rich repeat 552 609 IPR001611 GO:0005515
Glsi04g2262 1105 Gene3D Transferase(Phosphotransferase) domain 1 882 1094 - -
Glsi04g2262 1105 MobiDBLite consensus disorder prediction 1085 1105 - -
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 183 279 - -
Glsi04g2262 1105 Gene3D Ribonuclease Inhibitor 327 426 IPR032675 -
Glsi04g2262 1105 Gene3D Ribonuclease Inhibitor 236 326 IPR032675 -
Glsi04g2262 1105 Pfam Leucine rich repeat N-terminal domain 30 69 IPR013210 -
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 882 1094 - -
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 406 720 - -
Glsi04g2262 1105 SUPERFAMILY L domain-like 31 292 - -
Glsi04g2262 1105 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 771 881 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2262 Glsi-ChrGlsi04 75279383 75283456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2262 54 1090 Receptor kinase-like Gene Family AT1G73080 40.056 0.0 657
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Glsi04g2262 Pkinase 1.4e-47 CL0016