LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Glsi04g2256	ATGACTTGTTTTTCTTTATTCTTTGGTAGAAAGGTGAATTCTTCGGCAAGGTTAGATCCGGACATTGAAGCAGGCATTCACAATGTTAAACTTTATACCTACAAAGAACTAAGAATTGCCACGGAGGATTTTAGTCCTGTCAGTAAAATTGGGGAGGGCGGTTTTGGTTCTGTCTACAAGGGACGGCTAAAAGATGGAAAAGTTGCTGCTATTAAAGTTCTTTCAGCTGAATCAAGACAAGGGGTGAGGGAATTCTTGACAGAAATTAAGGTGATCTCAGAAATAGAGCATGAAAACTTAGTTAAGTTATACGGCTGTTGTGTGGAAGGAAATCACAGAATATTAGTGTACAATTACCTTGAGAATAACAGCCTTGCACAAACTCTTATAGGCGGAAGTCATAGCAATATCCAATTCAATTGGCAAACACGGCGTAGGATATGCATTGGGGTTGCACGTGGTATTGCTTTTCTTCACGAGGAAGTAAGACCACATATTGTTCATAGGGATATAAAAGCAAGCAACATTCTTCTTGACAAAGACCTTACACCCAAGATTTCAGATTTTGGGCTTGCAAAGCTTATCCCACCAAACATGACTCATGTCAGCACACGTGTGGCAGGAACTATAGGTTATTTGGCGCCAGAGTATGCAATAGGGGGGCAGCTGACACGGAAAGCTGACATTTACAGTTTTGGAGTCCTCCTTGTGGAGATAGTCAGTGGGAGATGTAACACAAATACACGATTACCAATAGATGAACAGTACATTCTAGAAAGGACTTGGCATCTTTACGAGCGAAGGGAATTGGTTGGACTGGTAGACGCATCACTAAATGGGGAGTTCGATGCTGAGGAGGCATGTAATTTTCTGAAGATTGGCCTTCTTTGCACCCAGGATTCTCCAAAGCTCCGGCCATCCATGTCTTCCGTAGTCAAGATGCTCACTGGTGAAATGGATGTTGATGACAGAGAAATAACACAACCAGCCTTGATTTCTGATTTTATGGATCTTAAAGTTAGTAGAAAACCAAAAAGTAATATTGATATTAAGACTTCGTCTTTATACAATGCATCCTCTTCCTTGGACAACCAGGATACTACTATGTCATCAGCTGCTTCAACTGCTGCAACAACAACCTTCACTGCACAATATGATCGAAGCATATAA	1170	0.4111	MTCFSLFFGRKVNSSARLDPDIEAGIHNVKLYTYKELRIATEDFSPVSKIGEGGFGSVYKGRLKDGKVAAIKVLSAESRQGVREFLTEIKVISEIEHENLVKLYGCCVEGNHRILVYNYLENNSLAQTLIGGSHSNIQFNWQTRRRICIGVARGIAFLHEEVRPHIVHRDIKASNILLDKDLTPKISDFGLAKLIPPNMTHVSTRVAGTIGYLAPEYAIGGQLTRKADIYSFGVLLVEIVSGRCNTNTRLPIDEQYILERTWHLYERRELVGLVDASLNGEFDAEEACNFLKIGLLCTQDSPKLRPSMSSVVKMLTGEMDVDDREITQPALISDFMDLKVSRKPKSNIDIKTSSLYNASSSLDNQDTTMSSAASTAATTTFTAQYDRSI	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Glsi04g2256	389	FunFam	cold-responsive protein kinase 1	120	331	-	-
	Glsi04g2256	389	ProSitePatterns	Protein kinases ATP-binding region signature.	50	72	IPR017441	GO:0005524
	Glsi04g2256	389	Pfam	Protein kinase domain	47	313	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g2256	389	PANTHER	CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3	28	349	-	-
	Glsi04g2256	389	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	166	178	IPR008271	GO:0004672\|GO:0006468
	Glsi04g2256	389	FunFam	cold-responsive protein kinase 1	16	119	-	-
	Glsi04g2256	389	CDD	STKc_IRAK	50	317	-	-
	Glsi04g2256	389	SMART	serkin_6	44	315	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Glsi04g2256	389	Gene3D	Phosphorylase Kinase; domain 1	15	119	-	-
	Glsi04g2256	389	Gene3D	Transferase(Phosphotransferase) domain 1	120	330	-	-
	Glsi04g2256	389	SUPERFAMILY	Protein kinase-like (PK-like)	28	337	IPR011009	-
	Glsi04g2256	389	ProSiteProfiles	Protein kinase domain profile.	44	331	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Glsi04g2256	Glsi-ChrGlsi04	75233914	75236940	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Glsi04g2256	8	318	Receptor kinase-like Gene Family	AT1G07650	54.167	2.30e-111	342

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Glsi04g2256		Pkinase	9.9e-48	CL0016