Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2254 ATGGATGTGGAATTGGTTGTAGGGTTTGTGCCATTTGATGTGCGCACACAGGCTACATATATAACAGTTCTTTATCAGTCTCAAAATTCATACTTTGTTCGCTGGAGTATATTTGTTCTCCTGACTGCCTGCTGCATCTCAAAGAAAGCACTTGAATCCGTTGTTGCTCATGCAACTTCCCAATACGAGACAATGTTGCCCTTCATAGAGCATGCTGAGACCGAAGACGTTATCAGTCTATCAGAGCTTCTTTGGGGCCTCTTTTGGAAACTATTATTCTGCTTGATTGATTATTGTTCCTCCAAGAGCAAGGCAATTGCATTGGAAACCTACTTGTTACCAATTTGTGACCCCAATTCATTCCCTAGGAATTTGGCCATAATTGCAAAAGAGATTGACCCAGATTTGATGTCAATAATGATACTAAATGGAGCGAAGTTTCTATCTTCAAGCATAACTGGCTCAACATCCAGAGGTGTTCTTACGATCACAAGAAGTGGTATTCTAAAAATTCAAGGGATTGGCCTAATAATGGTAGAGGTAGAATTGGATCTCTCACAATTCTTCTCGCTTGAGCTGCTTTCAAGTTTCAATATTGAGATTAAGAAAATGAGCAACATCAGCATGGTAGAGGCAAAGTTGCCACCTGGTTTCAGGTTCCATCCCAGAGATGAAGAACTTGTTTGTGACTACTTGATGAAGAAGATCACTCACTCTGACTCTTCTCTCATGATTGACGTTGACCTTAACAAGTGCGAGCCCTGGGATATTCCTGAAACAGCAAGTGTGGGAGGGAAAGAGTGGTATTTCTACACACTGAGAGACCGGAAGTATGCGACAGGGCTGCGAACAAATCGTGCCACTGCTTCAGGCTATTGGAAGGCGACAGGGAAGGACAGGGCTATCCTTCGCAGAGGAACTCTTGTTGGTATGAGGAAGACACTGGTGTTCTATCAAGGAAGGGCACCCAAAGGGAAAAAGACTGACTGGGTCATGCATGAGTTTCGCCTTGAAGGTGCCCTTGCTCCTCCTAAAATTTCTTCTACCAAGGAAGACTGGGTTTTGTGTAGGATGTTCTACAAGAACAGAGAAGAAATGGCCAAAGCTAGCATGGGAATCAGCTGCTATCACGAGGACACAGGCTCTTCATCCCTTCCAGAATTAATGGAATCTTACATCAGTTTTGATCAGCCACCTCAAACTCAAACCCATTTTGATGATGAGCAAGTGCCCTGCTTCTCCATTTTCTCTCAAAACCATACCACCAACCCTAACCCTAATATTTTCAACAACATAAACCCTATCAACACATCCACAAACACATATGGATCGGGAATGGCACCAACCAATTTGGGTTCTTGCTTAGACCCTTTTTCCTGTGACAGAAAGGTCTTAAAAGCCGTGCTGTGTCAGCTCACAAAGATGGAAAGAAACCCACTTATCCCTACTCAAAAATGCTCACCAAGTTTAGGAGAGGCAAGTAATAATTCTGAGAGTTTCTTATCTGAAGTGGGTATCCCCAACTTATGGAACAAGTACTGA 1542 0.4306 MDVELVVGFVPFDVRTQATYITVLYQSQNSYFVRWSIFVLLTACCISKKALESVVAHATSQYETMLPFIEHAETEDVISLSELLWGLFWKLLFCLIDYCSSKSKAIALETYLLPICDPNSFPRNLAIIAKEIDPDLMSIMILNGAKFLSSSITGSTSRGVLTITRSGILKIQGIGLIMVEVELDLSQFFSLELLSSFNIEIKKMSNISMVEAKLPPGFRFHPRDEELVCDYLMKKITHSDSSLMIDVDLNKCEPWDIPETASVGGKEWYFYTLRDRKYATGLRTNRATASGYWKATGKDRAILRRGTLVGMRKTLVFYQGRAPKGKKTDWVMHEFRLEGALAPPKISSTKEDWVLCRMFYKNREEMAKASMGISCYHEDTGSSSLPELMESYISFDQPPQTQTHFDDEQVPCFSIFSQNHTTNPNPNIFNNINPINTSTNTYGSGMAPTNLGSCLDPFSCDRKVLKAVLCQLTKMERNPLIPTQKCSPSLGEASNNSESFLSEVGIPNLWNKY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2254 513 Pfam No apical meristem (NAM) protein 215 337 IPR003441 GO:0003677|GO:0006355
Glsi04g2254 513 SUPERFAMILY NAC domain 203 362 IPR036093 GO:0003677|GO:0006355
Glsi04g2254 513 ProSiteProfiles NAC domain profile. 214 361 IPR003441 GO:0003677|GO:0006355
Glsi04g2254 513 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 211 418 - -
Glsi04g2254 513 FunFam NAC domain-containing protein 100-like 223 365 - -
Glsi04g2254 513 Gene3D NAC domain 223 366 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2254 Glsi-ChrGlsi04 75193685 75211270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2254 200 511 NAC Transcription Factor Family AT1G56010 58.055 4.09e-117 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Glsi04g2254 NAM 5.8e-36 No_clan