Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2240 ATGGCGAAACCCGGGCGAGGTCGTCGCTCATCTCCGTCAGGTTCCCTATCGGGATCTTCCTCTCGATCTCGTTCACCATCTCGGTCCCGCTCTATTTCGCGATCTCTGTCTCGCTCCCGATCTTTTTCTTCGTCGTCTTCTCCGTCCCGCAGTGTCAGTTCTCGAAGTAGAAGCCCCCCTCCTCAAAGGAAAAAAAGTCCTGCTGAAGCAGCTAGGCAAGGTCGGTCTCCAACATCCCAGTCTAAAAGGACTTCTCCACTGCCAAGGAAGCTTTCTCCTGTTCGGGAATCACTTGTTCTTCACATAGACAAACTCAGCAGGAATGTCAATGAAGGACATTTAAAAGAAATATTCAGTAACTTTGGTGAGGTTGTAAATGTGGAGTTGGCCATGGATCGGACTGTGAATCTTCCAAAAGGATGTGGATATGTGGAATTCAAGACAAGAAGGGATGCTGAAAAAGCCTTATTATACATGGATGGTGGTCAAATAGATGGGGTTATCATTAAGGCAAGATTTACTCTGCCTGCAAGACATAAGGTTTCACCACCCCCAAAGGTGACTGCTGTTTCTCCAAAGAGAGATGCCCCCAGAACTGATCATGCTAGTGCAGATGTTGGAAAAGATGGGCCAAAACAGCAAAGAGAATCTTCTCCTCGGAGAAATCTTCTTCCCTCCCCACGAAGGAGATCTCCTGTGCCTCGAAGAACTGGATCTCCAAGGAGGATGGATTCTCCTCGTTGCCATGCTGATTCTCCTGTTCGTCGTCGTTTGGACTGTCCATATCGTCGTGGAGACACACCTCCTAGAAGGAGGGCTGTGTCTCCTGCAAAAGGTCGATCTCCATCTCCACCAAGGCGCCTTAGATCTCCTGCAAGGGTCTCGCCTAGAAGGATGCACGGGGGTTTGGGACGTAGACATTCCCCACCTCCTCTGAGGCGTCGTTCACCACTTAGACGAGCTCGTAGTCCTCCTAGGAGGTCTCCAATTGGTCGTAGATGCAGTCGCTCTCCGATACGCAGGCCTGCACGCTTCCGTTCAAGATCCTTCTCCCCACGAAGAGGTAGACAGCACGCGAGACGTGGAAGGTCATCATCCTACTCTGATTCACCAAGTCCCCGCAAGTTCTCTATTATGCTAAAAGTTGTTCATGATTGTAGGCCTTTGAGGGGAAGAGGCAGTAGCAACAGCAGCAGTACCAGTTCACCACCCCCATCTCGCAAACCATAG 1230 0.5041 MAKPGRGRRSSPSGSLSGSSSRSRSPSRSRSISRSLSRSRSFSSSSSPSRSVSSRSRSPPPQRKKSPAEAARQGRSPTSQSKRTSPLPRKLSPVRESLVLHIDKLSRNVNEGHLKEIFSNFGEVVNVELAMDRTVNLPKGCGYVEFKTRRDAEKALLYMDGGQIDGVIIKARFTLPARHKVSPPPKVTAVSPKRDAPRTDHASADVGKDGPKQQRESSPRRNLLPSPRRRSPVPRRTGSPRRMDSPRCHADSPVRRRLDCPYRRGDTPPRRRAVSPAKGRSPSPPRRLRSPARVSPRRMHGGLGRRHSPPPLRRRSPLRRARSPPRRSPIGRRCSRSPIRRPARFRSRSFSPRRGRQHARRGRSSSYSDSPSPRKFSIMLKVVHDCRPLRGRGSSNSSSTSSPPPSRKP 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2240 409 Gene3D - 9 182 IPR012677 -
Glsi04g2240 409 MobiDBLite consensus disorder prediction 193 216 - -
Glsi04g2240 409 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 176 IPR000504 GO:0003723
Glsi04g2240 409 MobiDBLite consensus disorder prediction 391 409 - -
Glsi04g2240 409 MobiDBLite consensus disorder prediction 72 87 - -
Glsi04g2240 409 MobiDBLite consensus disorder prediction 10 61 - -
Glsi04g2240 409 SUPERFAMILY RNA-binding domain, RBD 25 173 IPR035979 GO:0003676
Glsi04g2240 409 MobiDBLite consensus disorder prediction 240 273 - -
Glsi04g2240 409 FunFam Serine/arginine-rich splicing factor SR45 3 183 - -
Glsi04g2240 409 MobiDBLite consensus disorder prediction 179 409 - -
Glsi04g2240 409 CDD RRM_RNPS1 100 172 IPR034201 -
Glsi04g2240 409 MobiDBLite consensus disorder prediction 291 361 - -
Glsi04g2240 409 SMART rrm1_1 99 172 IPR000504 GO:0003723
Glsi04g2240 409 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 102 166 IPR000504 GO:0003723
Glsi04g2240 409 MobiDBLite consensus disorder prediction 1 92 - -
Glsi04g2240 409 PANTHER RIBONUCLEIC ACID BINDING PROTEIN S1 3 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2240 Glsi-ChrGlsi04 75088128 75098299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2240 102 176 Eukaryotic Initiation Factors Gene Family AT3G11400 32.000 4.00e-08 52.8