Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glsi04g2239 ATGGCAGGCAGTGGCCTGCCATCCTTGGGCCGTGTGAAGCTCACTGATCTAGTTCCTTCTGAAGGGCTGCCATCTGATTCGTATAAAATATCCGTTTCAATTTTGTCACAGTCATTGGCTCAGTTTTCAGCTGCCATCATCCAGTTTCCCACAAGTGATGGGGCTCTTTTGAGATCTGGTTTAGAATCTGCTCGCCTCTACTTTCATCAAAGAGCATCATACCCACCTGCAGATATAATTCATACTAGTGACAATCATGAGTGGTGCAAGACATCTGGTTATTATGCAGATCCTCATTTGTGGCAAGAAACATATGATTATAGACCAGGTTTGACACCTTCAGAACCAAACAATTCAATTGAGTTCCCTCCAGCAGGCTTGCCAGATATATTTGCTTTATTTGGAAAAGCTGCAAGGATTATTCTGGATGCCATTAGCTTCCATTTGAATTTGCGCAGCTCTCCATTCTCTGAAATACTGGACAATGTTCCCCTGAGAAACAGAGAAATTTCATCTTCAGTCCTGTCTGTTTCCTGTCATGCAAGGCCATCATTTCGGGGGGCACAAAATAATATAGCCACTCAAGATGATGGCCAGTTGGTTATGTATACCGAACATGATCACCAAGTTGATAAATGCTTGATATCTCTTGTTAAGTCAGACAAGCCAGGTTTACATGTAAGAGACTTTCAAGGTCATTGGATTCTTGTAGATGGAAATCTGGGGCCTCAAGAAGCAGTTGTTTATCCTGGGCTTGCTCTCTATCAAGCAACTGCAGGCTATGTGAACCCTGCATTGCACAAAACTGAGATTAATATGGAGGGTAATATATATGGACGAAGTTCTTTAACCTTCAAACTCATGCCTAAATCCATGACTAATCTTAATTGTTCAGAAATGAGAGCTGCAGGTCATGGAGTTGAAGCTCAGTTCCAGCTTCCTGTTTTGGTAGATGACTTCATGCAAAGATCTCATCCAACTGATAATATCTTTAACAGACCTGGTTTTCAGTGCATCAATTTTCAAACGATCCAAGATGGATCTATGAAGACATTGATGCGGAGGAGAAAGCAAATTTCAAAAGGCAAGCCTCTGCCTCCTTCCAAGAGGTTAAGGCTTGAGGCACAGAGAGTTTTGAAAGAAAGGGTTCAGGATATTGCAGATAAGAAAGGCATCAAGCTGCGGTTCTGTAACCTGAAGGAATGTGAAAGTCACATTCACACACTAGATAGCCCATGTGCCAATATAAGAATGGAGATTGGGTGGCCACCTGGAGTGCCCTTTGTTCATCCCCATGATCTTCCAAATAAGGCGAAGCTTGGTTTTCTTGAGGCATATGAACCTGGTTGGACATCAGCCCACCATAATCTGGACAGGCTAGTCAACACTTGGCTAACTTCAACTGTAACTCTCTTTTTGCATTTTTCATATCCATATGACCAGGCATATCATATGGCTGATGTCTCTATTATGGATGTGTTCTGGTGTCTGCAGGAATCATTCTCCCTGATTTCCAAGACCTGTTCAACCTTTGATCAGATTGTGAAGGTCTGGGACAAACTTCGTATTCTTTCGTCTGAGGACTTTGCCAAGAAAACCGCGAAGAATTCACACGTCAAGGCCTTCATCAAGATGGTCAACTACACCCACGTTATGCCCACTCGATACACTCCCGATGCGGATCTCAAGGACGTCGTCACCGTCGATGCTATTCAGTCCCGGGACAAGAAGGTCTCAGCTGCCAAGGAGATCAAGCAGAGGTTCAAAACTGGGAAGAACAGATGGTTCTTTTCTAACCTCAGGTTTTAG 1809 0.4339 MAGSGLPSLGRVKLTDLVPSEGLPSDSYKISVSILSQSLAQFSAAIIQFPTSDGALLRSGLESARLYFHQRASYPPADIIHTSDNHEWCKTSGYYADPHLWQETYDYRPGLTPSEPNNSIEFPPAGLPDIFALFGKAARIILDAISFHLNLRSSPFSEILDNVPLRNREISSSVLSVSCHARPSFRGAQNNIATQDDGQLVMYTEHDHQVDKCLISLVKSDKPGLHVRDFQGHWILVDGNLGPQEAVVYPGLALYQATAGYVNPALHKTEINMEGNIYGRSSLTFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVLVDDFMQRSHPTDNIFNRPGFQCINFQTIQDGSMKTLMRRRKQISKGKPLPPSKRLRLEAQRVLKERVQDIADKKGIKLRFCNLKECESHIHTLDSPCANIRMEIGWPPGVPFVHPHDLPNKAKLGFLEAYEPGWTSAHHNLDRLVNTWLTSTVTLFLHFSYPYDQAYHMADVSIMDVFWCLQESFSLISKTCSTFDQIVKVWDKLRILSSEDFAKKTAKNSHVKAFIKMVNYTHVMPTRYTPDADLKDVVTVDAIQSRDKKVSAAKEIKQRFKTGKNRWFFSNLRF 602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glsi04g2239 602 ProSitePatterns Ribosomal protein L27e signature. 591 602 IPR018262 GO:0003735|GO:0005840|GO:0006412
Glsi04g2239 602 Gene3D - 62 327 IPR027443 -
Glsi04g2239 602 Pfam Ribosomal L27e protein family 530 602 IPR001141 GO:0003735|GO:0005840|GO:0006412
Glsi04g2239 602 Gene3D - 513 602 IPR038655 -
Glsi04g2239 602 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Glsi04g2239 Glsi-ChrGlsi04 75079865 75085347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Glsi04g2239 527 602 Cytoplasmic Ribosomal Protein Gene Family AT3G22230 67.500 8.73e-31 115